Special

MmuINT0104398 @ mm10

Intron Retention

Gene
Description
myosin VA [Source:MGI Symbol;Acc:MGI:105976]
Coordinates
chr9:75164130-75164404:+
Coord C1 exon
chr9:75164130-75164216
Coord A exon
chr9:75164217-75164295
Coord C2 exon
chr9:75164296-75164404
Length
79 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CATATGGGATTCTTTTCTAGGTG
3' ss Score
8.72
Exon sequences
Seq C1 exon
ATTTGATGAGAAGAGGGCAGTGCAGCAGCTAAGAGCATGTGGTGTCCTGGAGACCATCCGGATCAGCGCAGCAGGGTTTCCCTCACG
Seq A exon
GTGAGCCCAGGCTTCCAATGGAACTGAGCCTTCTGCAAGCAGTTCTTGAATAATAAGCTCATATGGGATTCTTTTCTAG
Seq C2 exon
GTGGACTTACCAAGAGTTTTTCAGCCGGTACCGGGTCCTAATGAAGCAAAAAGATGTGCTGGGAGATAGAAAGCAAACGTGCAAGAATGTATTAGAGAAACTAATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034593:ENSMUST00000123128:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(4.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.3=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAGAAGAGGGCAGTGC
R:
GCACGTTTGCTTTCTATCTCCC
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types