GgaINT1018700 @ galGal4
Intron Retention
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8300072-8300366:+
Coord C1 exon
chr10:8300072-8300158
Coord A exon
chr10:8300159-8300257
Coord C2 exon
chr10:8300258-8300366
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
ATCTCTATTTTATGGAACAGGTG
3' ss Score
7.41
Exon sequences
Seq C1 exon
ATTTGACGAAAAGCGAGCAGTGCAGCAGCTGAGAGCTTGTGGTGTCCTGGAGACCATCCGAATCAGTGCAGCTGGTTTCCCCTCCAG
Seq A exon
GTGTGTTTGCTGCTTTTTAGATCGCTTTCAGCTACGGTTATTCTTTGTAAGAGAGTTGTTTGTTGTTTGGACTGACACCATCTCTATTTTATGGAACAG
Seq C2 exon
GTGGACGTACCAAGAGTTCTTCAGCCGTTACCGTGTTCTCATGAAGCAGAAAGATGTCCTTAGTGACCGAAAACAGACATGTAAAAATGTCCTGGAGAAGCTGATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAGCTTGTGGTGTCCTG
R:
CAGAATCAGCTTCTCCAGGACA
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]