RnoINT0097223 @ rn6
Intron Retention
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82086637-82086911:+
Coord C1 exon
chr8:82086637-82086723
Coord A exon
chr8:82086724-82086802
Coord C2 exon
chr8:82086803-82086911
Length
79 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CATATGGGATTCTTTTCTAGGTG
3' ss Score
8.72
Exon sequences
Seq C1 exon
ATTTGATGAGAAGAGAGCAGTACAGCAGCTAAGAGCATGTGGTGTCCTGGAGACCATCCGGATCAGCGCAGCAGGGTTTCCCTCAAG
Seq A exon
GTGAGCCCAGGATTCCAATGGAGCCGAGCCTTCTGAGAGCAGTTCTTGAATGATAAGCTCATATGGGATTCTTTTCTAG
Seq C2 exon
GTGGACTTATCAAGAGTTTTTCAGCCGGTACCGGGTCCTAATGAAGCAAAAGGATGTGCTGGGAGATAGAAAGCAAACATGCCAGAATGTATTAGAGAAACTGATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866:ENSRNOT00000079535:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAGAAGAGAGCAGTACAGC
R:
GCATGTTTGCTTTCTATCTCCCA
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]