RnoEX0057235 @ rn6
Exon Skipping
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72218427-72225172:+
Coord C1 exon
chr10:72218427-72218579
Coord A exon
chr10:72219479-72219586
Coord C2 exon
chr10:72225087-72225172
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCAGATTCTTGTGTCTTCAGGCC
3' ss Score
6.77
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GACCCTGTTCCCCCTGAGCTGACTGGGCTCCTGCAGCAATCCCAAGACCCCCTGCTCATGATGCTGTTTCCTGCTAACCCTGAAGAGAAGACCCAGGAGGAGCTGTCTGGCCAGAGCAGGGCTCCTGCATTGACTGTGGTGTCCAAGTTCAAG
Seq A exon
GCCTCACTGGAACAGCTCCTGCAGGTCCTGCATAAAACAACCCCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGAGTCAGCCGCAGACTTTCCTCCAGGAAGAG
Seq C2 exon
CTTTTCGGTCCTGGTTAACTCGGAAACACATCAGAAGGTTACACATAGCTGCCACAGTCATCAAGCACGCATGGCATAAGTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852_MULTIEX1-12/18=11-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0061222=IQ=PD(52.4=37.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCCCCCTGAGCTGACT
R:
TCTCCACTTATGCCATGCGTG
Band lengths:
235-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]