RnoINT0096966 @ rn6
Intron Retention
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72222641-72223978:+
Coord C1 exon
chr10:72222641-72222744
Coord A exon
chr10:72222745-72223811
Coord C2 exon
chr10:72223812-72223978
Length
1067 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AGCCTTTCTCCTACCCCCAGAGC
3' ss Score
9.31
Exon sequences
Seq C1 exon
GGTCTCTCACCAGAACTTCATGGAAAGATATAAATTGCTAACAAGACTCCGACCTCGTACATCCTCTGGCCTCAGGAGCCTGTGTCCTGCCAAAGGGTCCTCTG
Seq A exon
GTGAGTGGGGCCTGCTTTTCATCATTTGTTCACCCCTAAGTTACGGAGGACTTCCCTGTGCATCCTTGGGGAGGAGGGTTCAGAGACTAATGGTTGCTGGAATAATGTGAGCAATAAACCCTAGCTGACAACAGTGTAGGCAGAGAGCTTCCTCTGGTGCCAGGGAGAGGTGGACATGGGTGAGCATTTTGGCTAATCCCACGAGAGGAGATAAACTGGATTAACCACGTGACAACCACTGCACATGACATAATCTGGACAGAAGCTTCAGGCATGAGATAAGCCAGAGGATGTGAGCAACTCCACACAGTAGCAGTGAGTAAGGCTGGGGAGAGAAGTTGTCTGACAGTGTAGCTGTCCATTCTAGGAATGTAGAAATGTTAAGGAAAGGTGGAGGGACAGACCCAAGGACAGATCTCAGCCCAACCACAGCTGCTCCCCAACCCACACTCTTCTGGGCCCCATCAGCGAGTTCTCTTCCTCTTAGGAGTTGTGTCACGTTCCCTTCTCTCCCTTTCTTTCTCCTCTCTCCATGGTTTGCTCTCCTGTCTCTCTTCCAAGCCCCTCTGGGCGCTGGTCCATTTTGTGGATGTCTCTCATCTCTCGTCTCCAGCATCTGCTTTGGTGGCCTCTGTCTCCAGAGAGGCTCTAGGCAGCTAACTGTGGTCAGAGCCCTCAGGTAAATCCTCCCACACAGGAGGCAGCCCTGCAAGTCTGGGAGGACTATCACATAGCTGGGTGTGTTCTCCCTTTTCTACACATGACTGACTGGAAGGGGTAAGGGGTGGGGCTGAGGGAGTGGCCAAGGAGCCTGGGATTCCCTTCTGCAGGCTTCCAACTCCCCTTGCCAGCTGCCCAAGGAGGCTTCAGAACACCCCCAAACAGCCAGGACTTTGGGGGACACAAGGGCTATCTCTACTCACAAAAAAAGGGGATAAGAAAGAAACGACTAGATCTAGAACTGCAAGAAAGAGGCTTAAAGAGCTCTAGGAGTGCACAGTCCATTTCTTCAGGCTTCGGAGCATACAGGAAAGCAGGGACTAATGAAGCCTTTCTCCTACCCCCAG
Seq C2 exon
AGCAGCCTCTGTGTGCCAAGGAGGCCACACTGCAGCCTCTACTACAGGACATTCTCCATGCTCTGCCAGCTTTAATTCAGACAGCAACCACTCCCAGTGACCCAGCTAAGACTGCACAAATCCCACTATACTGTGGCAGGACAAAGATTTTCATGACTGACTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852:ENSRNOT00000003886:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(4.0=72.2)
A:
NA
C2:
PF0006316=Myosin_head=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCTCACCAGAACTTCATGG
R:
ATGGAGTCAGTCATGAAAATCTTTGT
Band lengths:
270-1337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]