BtaINT0097867 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13162466-13164283:-
Coord C1 exon
chr19:13164180-13164283
Coord A exon
chr19:13162582-13164179
Coord C2 exon
chr19:13162466-13162581
Length
1598 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GGCCCTGTCTCCATCCTCAGAGT
3' ss Score
9.64
Exon sequences
Seq C1 exon
GGTCTCTCACCGGAACTTCATGGAGCGGTACCAGCTACTGAGAAGGCTCCGTCCTGCCATAACCCCCAGCCCCCACGGCCCGTGTCCAGATGGAGGGCGCTCAG
Seq A exon
GTGAGGGCACCCACTGGCCAGTCATCTGTTCACCCAGTTCCCTGAGCACCTACTTGGACCATCTCAGGGCGAGGGCCTGGGGCCTCAGAGATGAGTAAGACACAGTCCTGCCCTCATGGCTCTTGGTCCAATGGGAGAGAGACTAAAAGAAGGCAGTTAAGCAGTGAGGAAAGTGGTGAGACAGAAACAGGATGCTGTGGGTGGTGTAGAGAGGTATGAACCAAAGGCTTCCTGGAGGATGTGGCATCTGAGGTGGGGTGGGACTAGCCAGGTGAAGGCACTCCATGGACAGGAGACAGCACCCTGTGTGTGAGGAGCTCCAGGCTGTTGAAGGTTGCTGGCTCCTGGGCATAGAGGACAGTGGGAGGCGAGGCTGGGGGCAGGCGGGCCCAGTCCCAGAAGCCGGACATTCTTCAGATAGATGGGAGGCACTTCCAGGAAGGGAGGGGGTGATACCAGCCTGGGGCTTTCCAGAGGCCACTGCAGGGTGGGGCCCTGGGTGGCCAGAGGGGAGAGAGGCTCTAGATGTGGGCACAGTTGGGAAATGTTGGGAAGAAATTGGTCGGACTTGGCTAGCATTGGATTCGATGTAGGGAGGAGACGAAAGGATTAGCCAGGCCTGGCCAGTGGGGAAGAGAGGTCGGGAAAGGGCTTTCTTTCTGGGGCAGCTGCCGGGCCAGGCCTGGCCAGGGGGATGTCAGGAGAGGCCTGCTCTACAGGGGGTTGTCTGTCGCACTTGGCGTCACTGAGGCTGTGAGAGCAGGTGTGAAGACCCTGGGCAAAGGCCAAGGACGGGGCAAGTCCCCCCAATACACCCACACACACACACCTGGGCAAAGGCCAAGGACAGGGTGCGTGCCCCCAGTACACACACAACCCCCACAGCCTTCCCCCAGGGCCGTGTACCCACAGGCACAGTTCTGCTTTGTATCTCCCATCTCTCGGGCAGTTTTCCCACTCTCCTTTCATCCTTTCTCCCCACCTCTCCCCGCTCTCCCTGCGGTATGCTCTCCTGTTCTGTCTCTTGCCCAAAGCCCCCCGGGCCCCTGGTCGGCTTTGCTGCTGTTTCTCATCTGCAGCGTTTCCTCTGGCCGCCGCTGTCTCCAGAGAGGCCCTGGGCAGCTAAAGGTGGTCAGAGCCCTCAGGTAAACCCTCCATCTGTAGGAGCTGCCCCACCAGGTGTGGGGGGCAGGCAGGGCCCCCGCTGGGGTCTGGGGGTCTGTTCTCCGCTTTCCATCTGGGGTGGGAGGGCTCAGGGGCAGAGGGGGAGGCTGGGCTGCCCTGTGCGGCCCTCAGCATGTTTAGGGCCTTGGAAACGGGCTGGCAAAGCAGCGTGGGAGTCTAGGCACCAAGTGTCCTCTGCCCTAGGGGACCTCCAGGGTGGGGGCTGCCGGCCAGTGCAGGGCACAGCCTCCAGGGGGTGACCAAGATCCCTCGGGGCAGCCTGAGGGACGATGAGAAGAGGCCCCCTCTGGCCTCCTCCCCAAAAGGAAGGAAGGGATGTTGAGAAGCATGTGCAGCGGGAAGGAAGCCTGTGGCGCGTCAGGGGGACGCCGAGGGGATGGTGACGGACTGACGGGCCCTGTCTCCATCCTCAG
Seq C2 exon
AGTGCCCTCCATGCACCGAGCCGGCCACACTGCAGGGCCTCCTCCAGGAGATCCTCCACACACTGCCAGCCCCACTGCACTGCGGCAGGACCAAGGTGTTCATGACCGACTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675:ENSBTAT00000064679:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(3.9=69.4)
A:
NA
C2:
PF0006316=Myosin_head=PD(4.9=87.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCGGAACTTCATGGAGC
R:
GTGGAGTCGGTCATGAACACC
Band lengths:
214-1812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]