HsaINT0108451 @ hg19
Intron Retention
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34856909-34859040:-
Coord C1 exon
chr17:34858937-34859040
Coord A exon
chr17:34857076-34858936
Coord C2 exon
chr17:34856909-34857075
Length
1861 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GGGCCATCTCCCTCCCCCAGAAT
3' ss Score
8.07
Exon sequences
Seq C1 exon
GGTCTCTCACCGAAACTTTGTAGAACGATACAAGTTACTAAGAAGGCTTCATCCTTGCACATCCTCTGGCCCCGACAGCCCATATCCTGCCAAAGGGCTCCCTG
Seq A exon
GTGAGTGGGACCCATGAGTTAGTCATTTGTGCAACCACAGTTTACTGAGCATCTACCCTGTGCCCTGTCTTAGGGCTAGGGGCTGGGGCTTACTGGTGAATAAAACACAGCCCTGGTTTTGGTTCAGTGGGGGAAACAGATTCAAAAAAGACAAATAGCATGGAAAGTGGAAAAGCAGAGCTATGAGCAGGATGCTGTGGGTGGTGCTAGGGAGGTGTGAATTGGGGAAGGCTTCCTGGAAGAGGTAGTATCTGAGAATAAATTGGATTAGCCAGGTGATGGGTGGTCCACATGATAAATGTAATCTGAACAAAGGCCTAGAGGCTTGAGGCAGCAGTGTGGGTATGAGGAACTCCAGCCAGTTCTGTGTTGCTGGTTCATTGAGGCAGAGAACTGGGGCAGGTGAGGCTGGAGTGGCAGGTAGGGCTCCATCAAGGAATCTGGACTTTATTCTCTGGGCAGATGAGCAGGCACTGCAGGGGAAGGAGCAAATGACTCTTATCAGCCTCACACTTTCTGGAGACCACTCTGGGGGCACCATGGAGGGCTGTGGGATTGAGGCTGCAAAGTTGCCCCAATAGAGAGAAACAAGAATTGTGGGCACAGTCGGGAAATATTTGTTGGAAGAAACTGGTCAGTCTTGGTAGGGGCTTGACTAGATGTAGAGGGAGAGGAAAGGAGTAAATTAACTTAGCCTGGGAAGTGAGGAAAAGCAAGAGGAAAAGAGGTTCAGGGAGGCTGAAGAGCCCGGGCATGGGTGACTTGTCCTGCAGGTCCAGTGAAGAAGTCTGCAAGGCACTTAGGCAGGCTTTAGTCTCAAAGGAAGGATCTGGAGGCCCTCATATGGGGGTTGTCGGCATGCAGATAAAAGAGAGGCTGTGGGAGCCACAGGGCCCAGACACAGGCAGAGGGAGAACAGGCCAAGGACAGGCTGCCGGGGGGCCCCGCCTCGGCAGGACCCCAGCCCAGCACCTCTGCCCCTCCCACCCAGCCTTACCCTGGGCCCCTCACAGCCATTGGGGCAATCCTGCTTTGTTTCCTCCCCTCCTGGGCAGTTTTCACTTTCCTTTCACCCTTTCTCCTTTCTTCTCCCTCTCCATGGTTTGCTGTCCTGTTCCGTGTCTCTTGCCCATAGCCCTTCTGGCCCCTGGTTGATTTTGCTGCTGTTTCTCATCTGTGGTGTCTCCTTTGGCAGCCTCTGTCTTCAGAGAGGCACTGGGCATCTAAGGTGGTCAGAGCCCTCAGGTAAATCCTACCTCTCCAGGAGTCAGCTCTGCGAGCTGCGGGAGGGCAGGCAGTGGGACACGGGACCTTTGCAGGGCTGGGATTTTTTAAATTTATTTTTTAATTTATTCTTTTTATTTGCAGTAGAAGATTCCCAAACTAAGGGCTGGGATTGGATCTCCCTTTTCCCATACATGGTGGGGAGTTGAGGGGTCGGGGCTGAGGGAGTGGCCTATAGCTGCCCTATTTGGCCCTCAGGATGTGTGTTTGGGCCTTGGAAACAAATGCTGGCTGAGCAGCCTGGGATTCCAAGCTTGGAAGGAGTCACCCTTCCAGGTGTCAAGCACCCTCTGCCAGCCTGCCCAAAGGGACTCATGGCAGTAGAGGCTGTGGGACACCCCAGGACACACAGGCGCAAGTGGGTATTCCAAGGCTCCACGGAACAGCTAGCACCCTGAGGGACAACAGAGAGGCTGTTTGTGGCTTCCTCCAAAAGAAGAACAAGGAGAAAATGGCTAGAGCCAAGAACAGCAGGAAAGAGACCTGTAGAGTGCTAGGGAGGCCAAAGCCAGTTTCTTCAGGCCACAGAGGCATGTAGAGATGACCATGCACTGATGGGGCCATCTCCCTCCCCCAG
Seq C2 exon
AATGGTGTCCACACAGCGAGGAAGCCACGCTTGAACCTCTCATCCAGGACATTCTCCACACTCTGCCGGTCCTAACTCAGGCAGCAGCCATAACTGGTGACTCGGCTGAGGCCATGCCAGCCCCCATGCACTGTGGCAGGACCAAGGTGTTCATGACTGACTCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140-MYO19:NM_025109:18
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(4.0=72.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCTCACCGAAACTTTGT
R:
ATAGAGTCAGTCATGAACACCTTGG
Band lengths:
270-2131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)