MmuINT0104095 @ mm9
Intron Retention
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84719042-84720904:+
Coord C1 exon
chr11:84719042-84719145
Coord A exon
chr11:84719146-84720737
Coord C2 exon
chr11:84720738-84720904
Length
1592 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
AGCCTTTCTCCTACCCCCAGAGC
3' ss Score
9.31
Exon sequences
Seq C1 exon
GGTCTCTCACCAGAACTTCATAGAAAGATATAAACTACTGAGAAGGCTCGGACCTCGCATGTCCTCTGGCCTCGGGGGCCTGGAGCCTGCCGAAGGGTCCTCTG
Seq A exon
GTGAGCGGGGCCCGTTTTTGTCGTTTGTTCAGCCCTAGGTTACTGAGGACTTACCTGTGCGTCCTTGGGGATGAGGGTTCAGAGACTTATGGTTGCTGGAGGTAATAAACCCCAGCTGACAACAGTGCAGACAGGCAGAGAGCTTCCTCGGGTGCCAGTCAGGGAGAGGTGGACATGGGAGAGCATTTTGGGGGAGGTGTATAGGAGGATAAGTTGGATTAGCCACGTGACAACACTGCACATGACAAAGGTAATCTGAACAAAAGCCTCCAGGCCTAAGACAGAGCAGAAGGTCTGAGCAAGTCCACACAGTAGTGGTAAGGAAGGCTGGGGTGCCAGCTGGGCCCTAGTCAGGAAACATGGACTTGGAAGCTGGGCAGTGGTGGCACACATCATTAATCCCAGCACTTGGGAGGCAGGGGCAGGCTGATATCTGCGAGTTGAAGGCCAGTCTGATCTACAGAGGGAGTTCCAGGACAGCCAGGACCATGCAGAGAAAACAAAACCAACATGGACTTTATTTCTGGGTAGATGGGGTACCACCCTTCAGGGGAGAGAGCCAGTGTTCTATCCGCCTCATGCTCTCATCTGCTCTAGGGGCCCTGTGGGAGGTCCTGGGAGTGAGGTTGTGGAGCTATCCCAGTAGAGAGGCCAGAGCTGTGGGCAGTTGAGTAATAAGGGGACAAAACTTTTCAGTATTGGTAGCATGACTCCATACAGACAAAACGGAGGTGAGCCAGCCTTGGCAGTGGGAAGGAAGAACAGAAGGGAATCTTAGGGGTCTGGACTGGTCCTACAGGGCCTGAGCTCCAGTCCCAGGAAGCAGCAAGGAGAGTTATGTCCAAAGCACTTGGGCAAGTCTAGCCTGTGACTATGATTGAGAAGTCGTCTGGCACAGTGTAGCTGTCCATAACTAGGAATGTGGAAATGCTAGGGACAGGTGGAAGGACAGACACAGGACAAATCTCAGCCAACCACAGTGGTGCCCCCACTACCCATGCTCTTCTGGGCCCCATCAGCCAGTTCTCCTCCTCTTGGGAGTTGTGTCACCTTCCCTTCCCTCCCTTTCTCTCTCCTCTCTCCATGGTTTGCTCTCCTGTCTCTTCCAAGCCCCTCTGGGCGCTGGTCCATTTTGTGGATGTCTCTCATCTCTCGTCTCCAGCATCTGCTTTGGTGGCCTCTGTCTCCAGAGAGGCACTAGGCAGCTAACTGTGGTCTGAGGCCTCAGGTAAATCCTGCCACACAGGAGGCAGCCCTGCGAGTCTGGGAGGGCTGTCACACAGCTGGGTGTGTTCTCCCTTTTCTACGCAGGACTGACTGGAAGGGGGGAGTGGTGGGGCTGAGGGAGTGGCCAAGCAGCCTGGGAGGCCCTTTTCCAGGCTCCCAGCTCCCCTTGCCAGCCTGTCCAAGGAAGCTTCAGGACACTCCCAAACAGCCAGGATTTCGGGGGACACAAGAGAGGGGGAAAGGAAGAAATGAGTAGGTCTAGAACTGCAAGAACAAGGCTTAAAGAGCTCTAGGGAGTCCAGTGTCTTCAGGCTACAGAGTCTATGGGAAAGCAGGGACTGATGAAGCCTTTCTCCTACCCCCAG
Seq C2 exon
AGCAGCCTCTGTGTGCCAAGGAGGCCACACTGCAACCTCTACTACAGGACATTCTCCATGCTCTGCCAGCTTTAATTCAGACAGCAGCCACTCCCAGTGACCCGGCTAAGAACACACAAATCCCACTGTACTGTGGCAGGACAAAGATCTTCATGACTGACTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-Myo19:NM_025414:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(4.3=77.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCTCACCAGAACTTCAT
R:
CATGGAGTCAGTCATGAAGATCT
Band lengths:
271-1863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: