MmuEX0030463 @ mm9
Exon Skipping
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84719042-84720904:+
Coord C1 exon
chr11:84719042-84719145
Coord A exon
chr11:84720308-84720373
Coord C2 exon
chr11:84720738-84720904
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTCTCATCTCTCGTCTCCAGCAT
3' ss Score
9.12
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGTCTCTCACCAGAACTTCATAGAAAGATATAAACTACTGAGAAGGCTCGGACCTCGCATGTCCTCTGGCCTCGGGGGCCTGGAGCCTGCCGAAGGGTCCTCTG
Seq A exon
CATCTGCTTTGGTGGCCTCTGTCTCCAGAGAGGCACTAGGCAGCTAACTGTGGTCTGAGGCCTCAG
Seq C2 exon
AGCAGCCTCTGTGTGCCAAGGAGGCCACACTGCAACCTCTACTACAGGACATTCTCCATGCTCTGCCAGCTTTAATTCAGACAGCAGCCACTCCCAGTGACCCGGCTAAGAACACACAAATCCCACTGTACTGTGGCAGGACAAAGATCTTCATGACTGACTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-'28-28,'28-27,29-28
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(4.3=77.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAGGCTCGGACCTCG
R:
GTGTTCTTAGCCGGGTCACTG
Band lengths:
181-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: