HsaEX0041079 @ hg19
Exon Skipping
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34856909-34859040:-
Coord C1 exon
chr17:34858937-34859040
Coord A exon
chr17:34857692-34857801
Coord C2 exon
chr17:34856909-34857075
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCCGTGTCTCTTGCCCATAGCCC
3' ss Score
10.45
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGTCTCTCACCGAAACTTTGTAGAACGATACAAGTTACTAAGAAGGCTTCATCCTTGCACATCCTCTGGCCCCGACAGCCCATATCCTGCCAAAGGGCTCCCTG
Seq A exon
CCCTTCTGGCCCCTGGTTGATTTTGCTGCTGTTTCTCATCTGTGGTGTCTCCTTTGGCAGCCTCTGTCTTCAGAGAGGCACTGGGCATCTAAGGTGGTCAGAGCCCTCAG
Seq C2 exon
AATGGTGTCCACACAGCGAGGAAGCCACGCTTGAACCTCTCATCCAGGACATTCTCCACACTCTGCCGGTCCTAACTCAGGCAGCAGCCATAACTGGTGACTCGGCTGAGGCCATGCCAGCCCCCATGCACTGTGGCAGGACCAAGGTGTTCATGACTGACTCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140_MULTIEX1-7/12=6-8
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(4.0=72.2)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACCGAAACTTTGTAGAACGA
R:
TCATGAACACCTTGGTCCTGC
Band lengths:
256-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)