RnoEX0057238 @ rn6
Exon Skipping
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72222641-72223978:+
Coord C1 exon
chr10:72222641-72222744
Coord A exon
chr10:72223306-72223423
Coord C2 exon
chr10:72223812-72223978
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCTCCTGTCTCTCTTCCAAGCCC
3' ss Score
8.63
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGTCTCTCACCAGAACTTCATGGAAAGATATAAATTGCTAACAAGACTCCGACCTCGTACATCCTCTGGCCTCAGGAGCCTGTGTCCTGCCAAAGGGTCCTCTG
Seq A exon
CCCCTCTGGGCGCTGGTCCATTTTGTGGATGTCTCTCATCTCTCGTCTCCAGCATCTGCTTTGGTGGCCTCTGTCTCCAGAGAGGCTCTAGGCAGCTAACTGTGGTCAGAGCCCTCAG
Seq C2 exon
AGCAGCCTCTGTGTGCCAAGGAGGCCACACTGCAGCCTCTACTACAGGACATTCTCCATGCTCTGCCAGCTTTAATTCAGACAGCAACCACTCCCAGTGACCCAGCTAAGACTGCACAAATCCCACTATACTGTGGCAGGACAAAGATTTTCATGACTGACTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852_MULTIEX1-15/18=14-16
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(4.0=72.2)
A:
NO
C2:
PF0006316=Myosin_head=PD(0.1=0.0)
Main Inclusion Isoform:
ENSRNOT00000003886fB9234
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCTCACCAGAACTTCATGG
R:
AAATCTTTGTCCTGCCACAGT
Band lengths:
254-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]