RnoALTA0025362-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72222641-72223423:+
Coord C1 exon
chr10:72222641-72222744
Coord A exon
NA
Coord C2 exon
chr10:72223358-72223423
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTCTCATCTCTCGTCTCCAGCAT
3' ss Score
9.12
Exon sequences
Seq C1 exon
GGTCTCTCACCAGAACTTCATGGAAAGATATAAATTGCTAACAAGACTCCGACCTCGTACATCCTCTGGCCTCAGGAGCCTGTGTCCTGCCAAAGGGTCCTCTG
Seq A exon
NA
Seq C2 exon
CATCTGCTTTGGTGGCCTCTGTCTCCAGAGAGGCTCTAGGCAGCTAACTGTGGTCAGAGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852-27-28,27-27,27-26-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(4.0=72.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSRNOT00000003886fB9234
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAACAAGACTCCGACCTCG
R:
TGAGGGCTCTGACCACAGTTA
Band lengths:
133-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]