MmuALTA0011556-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84905540-84906871:+
Coord C1 exon
chr11:84905540-84905643
Coord A exon
NA
Coord C2 exon
chr11:84906806-84906871
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CTCTCATCTCTCGTCTCCAGCAT
3' ss Score
9.12
Exon sequences
Seq C1 exon
GGTCTCTCACCAGAACTTCATAGAAAGATATAAACTACTGAGAAGGCTCGGACCTCGCATGTCCTCTGGCCTCGGGGGCCTGGAGCCTGCCGAAGGGTCCTCTG
Seq A exon
NA
Seq C2 exon
CATCTGCTTTGGTGGCCTCTGTCTCCAGAGAGGCACTAGGCAGCTAACTGTGGTCTGAGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-39-35,39-34-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(4.3=77.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSMUST00000093969fB2607
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCTCACCAGAACTTCAT
R:
GCCTAGTGCCTCTCTGGAGAC
Band lengths:
145-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types