RnoALTA0025362-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72222641-72223423:+
Coord C1 exon
chr10:72222641-72222744
Coord A exon
chr10:72223306-72223357
Coord C2 exon
chr10:72223358-72223423
Length
52 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCTCCTGTCTCTCTTCCAAGCCC
3' ss Score
8.63
Exon sequences
Seq C1 exon
GGTCTCTCACCAGAACTTCATGGAAAGATATAAATTGCTAACAAGACTCCGACCTCGTACATCCTCTGGCCTCAGGAGCCTGTGTCCTGCCAAAGGGTCCTCTG
Seq A exon
CCCCTCTGGGCGCTGGTCCATTTTGTGGATGTCTCTCATCTCTCGTCTCCAG
Seq C2 exon
CATCTGCTTTGGTGGCCTCTGTCTCCAGAGAGGCTCTAGGCAGCTAACTGTGGTCAGAGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852-27-28,27-27,27-26-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(4.0=72.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAACAAGACTCCGACCTCG
R:
TGAGGGCTCTGACCACAGTTA
Band lengths:
133-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]