RnoEX0057245 @ rn6
Exon Skipping
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72212470-72225172:+
Coord C1 exon
chr10:72212470-72212546
Coord A exon
chr10:72214174-72214264
Coord C2 exon
chr10:72225087-72225172
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTTTCCGCCCTTCAGGTC
3' ss Score
11.92
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
AGGATTGTTTCGAGGTGACCAGAGAGGCCATGCTCCATCTGGGCATCGACACCCCCACCCAGAACAACATCTTTAAG
Seq A exon
GTCCTAGCTGGACTACTGCACCTTGGCAATGTCCACTTCGTTGACTCAGAGGATGAAGCCCAGCCCTGCCAACTGATGGATGGTACCAAGG
Seq C2 exon
CTTTTCGGTCCTGGTTAACTCGGAAACACATCAGAAGGTTACACATAGCTGCCACAGTCATCAAGCACGCATGGCATAAGTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852_MULTIEX1-5/18=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.8=100)
A:
PF0006316=Myosin_head=FE(4.6=100)
C2:
PF0061222=IQ=PD(52.4=37.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
- RnoALTA0025362-1/3
- RnoALTA0025362-2/3
- RnoEX0057224
- RnoEX0057233
- RnoEX0057234
- RnoEX0057235
- RnoEX0057236
- RnoEX0057237
- RnoEX0057238
- RnoEX0057239
- RnoEX0057240
- RnoEX0057244
- RnoEX0057246
- RnoEX0057247
- RnoEX0057248
- RnoEX0057249
- RnoINT0096955
- RnoINT0096956
- RnoINT0096957
- RnoINT0096961
- RnoINT0096963
- RnoINT0096965
- RnoINT0096966
- RnoINT0096967
- RnoINT0096968
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTGTTTCGAGGTGACCA
R:
CACTTATGCCATGCGTGCTTG
Band lengths:
159-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]