BtaEX0023521 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13170875-13173146:-
Coord C1 exon
chr19:13173070-13173146
Coord A exon
chr19:13171510-13171600
Coord C2 exon
chr19:13170875-13171046
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTCCTCTCCTGCCCCCTCAGGCC
3' ss Score
9.79
5' ss Seq
AGTGTGAGG
5' ss Score
2.87
Exon sequences
Seq C1 exon
AGGATTGTTTCGAGGTGACCAGGGAGGCCATGCTTCATTTGGGCATCGATGCCCCCACCCAGAACAACATCTTTCAG
Seq A exon
GCCCTGGCTGGACTGCTGCACCTCGGCAACACCCGGTTTGCTGACTCAGGGAACGAAGCCCAGCCCTGCCCGCTGGTGGATGATGCTCAGT
Seq C2 exon
GCTCTGTTGGGACGTCGGCCTTGCTGCTGGGGCTCCCGGAAGATCATCTGCTGGAGACACTACAGATTCGAACCATCCGGGCGGGCAGGGGCCAGCAGGTATTCCAGAAGCCCTGCTCTCAGGCCGAGTGCAACACCCGCAGAGACTGTCTGGCCAAACTGGTCTATGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675_MULTIEX2-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.3=100)
A:
PF0006316=Myosin_head=FE(5.1=100)
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGGCCATGCTTCATTTG
R:
AGGGCTTCTGGAATACCTGCT
Band lengths:
171-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development