BtaINT0097857 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13170875-13171600:-
Coord C1 exon
chr19:13171510-13171600
Coord A exon
chr19:13171047-13171509
Coord C2 exon
chr19:13170875-13171046
Length
463 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGG
5' ss Score
2.87
3' ss Seq
AGGGTATTTCTGCCTCCCAGGCT
3' ss Score
5.33
Exon sequences
Seq C1 exon
GCCCTGGCTGGACTGCTGCACCTCGGCAACACCCGGTTTGCTGACTCAGGGAACGAAGCCCAGCCCTGCCCGCTGGTGGATGATGCTCAGT
Seq A exon
GTGAGGGCGAGGACCAGGGGCCTTGGTCACACCGCCCAAGCGTGAGGCAGGCCCTGACCAGAGGAGGGCCAGCGTGTGGTGGGATCGGGTGCAAGGAGGCCAGAGGGTGCAGTTTGGGATCTGTGCCCCTGGGCTGTCGGCTGTAGGGCCCTGCCCTGGAGGGGTTCCTCCTCACCCCAGCTCTGCTGAGGCAGACAGCTTCCTCTGCATCTTACAGATGAGAAAACGAGAGCAGGGGCGGGTGGGGGTGAGTGGGTTATGCAGTGCTTTATCCCACTCCTGGCCGTGTGGACTGGGGCACAGCAGTCCTGGGTTCAAGTCCTGCCCCTGCCCCTGTTGAGTCTCTTCTCTCCCCGTTCCTGAGTTTGCTCTGCCCCATTGAGGGGGTCACGGCTCCACCATGATGACTTCACGGGGCCTTGTGCAGAGGGCCTTTTGGACGGAGGGTATTTCTGCCTCCCAG
Seq C2 exon
GCTCTGTTGGGACGTCGGCCTTGCTGCTGGGGCTCCCGGAAGATCATCTGCTGGAGACACTACAGATTCGAACCATCCGGGCGGGCAGGGGCCAGCAGGTATTCCAGAAGCCCTGCTCTCAGGCCGAGTGCAACACCCGCAGAGACTGTCTGGCCAAACTGGTCTATGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675:ENSBTAT00000064679:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGGACTGCTGCAC
R:
GTGCATAGACCAGTTTGGCCA
Band lengths:
259-722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]