RnoINT0096956 @ rn6
Intron Retention
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72214174-72214785:+
Coord C1 exon
chr10:72214174-72214264
Coord A exon
chr10:72214265-72214613
Coord C2 exon
chr10:72214614-72214785
Length
349 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
GGAGGACTCTCCTCTCCCAGGCT
3' ss Score
3.7
Exon sequences
Seq C1 exon
GTCCTAGCTGGACTACTGCACCTTGGCAATGTCCACTTCGTTGACTCAGAGGATGAAGCCCAGCCCTGCCAACTGATGGATGGTACCAAGG
Seq A exon
GTGAGAGAAGAGGATGGGAAATGCACCTGGCAGGAATGACTAGTGTTAGTGGACTGCAGTGGGAAATTAAAGGGTGATTAAACCCTTGATTAAACCGTCTGCTGTAGGGCCCACCATGGATAATTTTATCCTGAGCCTCTGATGAAGCCAACAGTGTTGTCTCTAACAATCAGAGTCAGGTGGCTTGGAAAGTGATTTGTCCAACTGTAACACTGTGACTTCAAGTCCTGCCTCTGCCACATAAGGAGGCCTTGGGCAAGCCTCTTCATCCATCAGAACCTGTGTTTCCTCCGTCCGTCCACTCGGTTCCAGTGAGGGTGTTTGCCTAAGGAGGACTCTCCTCTCCCAG
Seq C2 exon
GCTCTGTCAGGACCTCAGCCTTGCTGCTGCAGCTCCCAGACAACATGCTGCTGGAGAGCATGCAGATTCGAACCATCAAGGCAGGCAAGCAGCAGCAGGTGTTCCAGAAGCCCTGCTCCAGAGCTGAGTGTGACACACGCAGAGACTGTCTGGCCAAACTGATCTATGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852:ENSRNOT00000003886:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAGCTGGACTACTGCACC
R:
CGTGCATAGATCAGTTTGGCCA
Band lengths:
262-611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]