HsaINT0108447 @ hg19
Intron Retention
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34866585-34867294:-
Coord C1 exon
chr17:34867204-34867294
Coord A exon
chr17:34866757-34867203
Coord C2 exon
chr17:34866585-34866756
Length
447 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGG
5' ss Score
2.87
3' ss Seq
AGAGGATTTGCCCCTCCCAGACT
3' ss Score
2.16
Exon sequences
Seq C1 exon
GTCCTAGCTGGACTGCTGCACCTTGGCAATATCCAGTTTGCTGCCTCCGAGGATGAAGCCCAGCCCTGCCAGCCGATGGATGATGCCAAGT
Seq A exon
GTGAGGGTCAGGGTGTAGGATGGGGCAGGCCCTGTCAGGAAGGTAGCCAGCATTGCTGGGGTTGGGTGGAAGGCTGGATGGTGAAAATTGGAATCTGATGCCCTTGCTTATGCCACCCACCATAGGGCCTGGCCCTGGATCATTTACTCCTCACCCTGTCTGGTGAGGCAGACAGTATCGTCCCCATCTTAAAGATGAGAAAATGAGTCAGAGGTTTGTAAAGTGATTTGTCCCATACATGGCAGCATGGACTGGTACATGAAAGTGCTGGGTTTGAGTTCTGACTGCTGTTTATGGAGTCCTTTGGGTGAGTCACTTCACTGATCAGAACTTAGGTTTCTTCTGTCCAGTTGGGCAAGTCATGGTCCCGCTGTGATGACTTCACAGTGCCTCGTGAAGAGGACTGGATGGAGAGTGATTTGCCTAAAGAGGATTTGCCCCTCCCAG
Seq C2 exon
ACTCTGTCAGGACGGCAGCCTCGCTGCTGGGGCTCCCAGAGGACGTGCTGCTGGAGATGGTGCAGATTAGAACCATCAGGGCAGGCAGACAGCAGCAGGTGTTCCGGAAGCCCTGCGCCCGAGCCGAGTGTGACACCCGTAGAGACTGCCTGGCCAAACTGATCTATGCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140-MYO19:NM_025109:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.4=100)
A:
NA
C2:
PF0006316=Myosin_head=PU(54.7=97.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAGCTGGACTGCTGCAC
R:
CGCGCATAGATCAGTTTGGCC
Band lengths:
262-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)