MmuINT0104085 @ mm10
Intron Retention
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84897121-84897720:+
Coord C1 exon
chr11:84897121-84897211
Coord A exon
chr11:84897212-84897548
Coord C2 exon
chr11:84897549-84897720
Length
337 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
GGCCCTCCTTTCTCCCCCAGTCT
3' ss Score
9.44
Exon sequences
Seq C1 exon
GTCCTAGCTGGACTGCTGCACCTTGGCAATGTCCATTTTGTTGACTCAGAGGATGAAGCCCTGCCCTGCCAAGTGATGGATGATACCAAGG
Seq A exon
GTGAGAGAAGAGGATGGGGGAATGCGCCTGGCAGGAATGGCTAGCTGTAGTGGAATGTGGTGGGAAATCGAAGGGTGAACTTTTCAGTGTAGCGCCCTTGACTAAACCATCTGCTGTAAGGCCCACCATGGATAATTTACTCCACAGCCTCTGATGAAGCCAGCAATGTTGTCTTCAACAATCAGAGTCGGGTGGCTTGGAAAGTGATTTGTCCGATTCTAACACTGTGACTTCAAGTCCTGCCTCTGCCACGTAAGGAGGCCTTGGACAAGCCTCTTCACCCACTCAGTTCCAGTGGAGGATGTTTGCCTAAGGAGGGCCCTCCTTTCTCCCCCAG
Seq C2 exon
TCTCTGTGAGGACCTCAGCCTTGCTGCTGCAGCTCCCAGAGAAAATGCTGCTGGAGAGTATGCAGATTCGAACCATCAAGGCAGGCAAGCAGCAGCAGGTGTTCCAGAAGCCCTGCTCCCGAGCCGAGTGTGACACACGCAGAGACTGTCTGGCCAAACTGATCTATGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527:ENSMUST00000093969:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAGCTGGACTGCTGCAC
R:
CGTGCATAGATCAGTTTGGCCA
Band lengths:
262-599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types