DreEX6009016 @ danRer10
Exon Skipping
Gene
ENSDARG00000073761 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr5:3643018-3646683:-
Coord C1 exon
chr5:3646607-3646683
Coord A exon
chr5:3644950-3645040
Coord C2 exon
chr5:3643018-3643183
Length
91 bp
Sequences
Splice sites
3' ss Seq
ATTGTTGTTTTTCTGAAAAGATT
3' ss Score
5.11
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
Exon sequences
Seq C1 exon
AAGACTGTTTGCAAGAGACGGTGGAAGCCATGATCAGCCTTGGCATTGATGAAGGGAAACGGGCACAGATATTCAAG
Seq A exon
ATTCTTGCAGGTCTTCTGCAGTTGGGGAATGTGGACTTCAGTCCCGCACCAGAAGAGGCTCAGCCATGTGATCTCAGTGGACAATCCAAAG
Seq C2 exon
GTTTTCTGCAGAAAGCGGCGGATCTGCTGCAGGTTTCTTTAGATGAGCTGCAGTCGTGTCTGATAGTGAGAACTCTGCGTGCTGGCAAACAAAACATCCTCAAACCTTGCTCTCAGTCCGAGTGTGGCATCCGCAGAGACTGTCTTGCTAAAGTCATTTATGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073761-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.2=100)
A:
PF0006316=Myosin_head=FE(6.2=100)
C2:
PF0006316=Myosin_head=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAAGGGAAACGGGCAC
R:
TAGCAAGACAGTCTCTGCGGA
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]