GgaEX1038027 @ galGal3
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8089239-8090945:-
Coord C1 exon
chr19:8090869-8090945
Coord A exon
chr19:8090372-8090462
Coord C2 exon
chr19:8089239-8089410
Length
91 bp
Sequences
Splice sites
3' ss Seq
AGTGCTTGATTATATTGCAGGTA
3' ss Score
6.27
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGGACTGCTTCGAGGTGACCAGAGATGCAATGTTTCACTTGGGCATTGACCACTCCACGCAGAACAATATTTTCAAG
Seq A exon
GTATTGTCAGGCCTTCTCCATCTTGGGAACATTCAATTCTCTAATCCAGTGGATGAATCTCAGCCTTGTGAACTAGAAGATAAAGCCAAAG
Seq C2 exon
ACTTTGTGAAGACTGCAGGAGACTTGCTGAAGATACCTGTCGAGGAGCTACTGCAATCATTAAGAATTCGAACAATAACCGCTGGAAAACAACAGCAAGTCGTCAAGAAGCCGTGCTCTAGAACTGAATGTGACACTAGGAGGGACTGCCTCGCCAAAGTGATCTATGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
PF0006316=Myosin_head=FE(4.3=100)
C2:
PF0006316=Myosin_head=FE(8.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCGAGGTGACCAGAGAT
R:
CTTGCTGTTGTTTTCCAGCGG
Band lengths:
171-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]