MmuEX6088402 @ mm10
Exon Skipping
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84895268-84897720:+
Coord C1 exon
chr11:84895268-84895364
Coord A exon
chr11:84897121-84897211
Coord C2 exon
chr11:84897549-84897720
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCATCCCTTCTGCCCTTCAGGTC
3' ss Score
10
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
ATTTGCAAAGGAGCCACCAAGGATGAAAGGCTCCAATGGCACCTCCCTGAGGGAACTGCCTTCTCCTGGCTACCCAATCCAGAAAGCAGTTTGGAAG
Seq A exon
GTCCTAGCTGGACTGCTGCACCTTGGCAATGTCCATTTTGTTGACTCAGAGGATGAAGCCCTGCCCTGCCAAGTGATGGATGATACCAAGG
Seq C2 exon
TCTCTGTGAGGACCTCAGCCTTGCTGCTGCAGCTCCCAGAGAAAATGCTGCTGGAGAGTATGCAGATTCGAACCATCAAGGCAGGCAAGCAGCAGCAGGTGTTCCAGAAGCCCTGCTCCCGAGCCGAGTGTGACACACGCAGAGACTGTCTGGCCAAACTGATCTATGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-'21-23,'21-21,26-23=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
PF0006316=Myosin_head=FE(4.6=100)
C2:
PF0006316=Myosin_head=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGCTACCCAATCCAGA
R:
GTCTCTGCGTGTGTCACACTC
Band lengths:
181-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types