BtaEX0023520 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13171510-13173365:-
Coord C1 exon
chr19:13173269-13173365
Coord A exon
chr19:13173070-13173146
Coord C2 exon
chr19:13171510-13171600
Length
77 bp
Sequences
Splice sites
3' ss Seq
TGGCTCGGATTCCTTTACAGAGG
3' ss Score
6.97
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
ATCTACAAAGGAGCCCACGCGGAGGAGAGGGTCCGGTGGCGCCTCCCCGAGGGAGCCGCCTTCTCCTGGCTGCCCCACCCAGAGAGGACCTTGGAAG
Seq A exon
AGGATTGTTTCGAGGTGACCAGGGAGGCCATGCTTCATTTGGGCATCGATGCCCCCACCCAGAACAACATCTTTCAG
Seq C2 exon
GCCCTGGCTGGACTGCTGCACCTCGGCAACACCCGGTTTGCTGACTCAGGGAACGAAGCCCAGCCCTGCCCGCTGGTGGATGATGCTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675_MULTIEX2-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.5=100)
A:
PF0006316=Myosin_head=FE(4.3=100)
C2:
PF0006316=Myosin_head=FE(5.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAAAGGAGCCCACGCG
R:
GAGCATCATCCACCAGCGG
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development