BtaINT0097855 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13173070-13173365:-
Coord C1 exon
chr19:13173269-13173365
Coord A exon
chr19:13173147-13173268
Coord C2 exon
chr19:13173070-13173146
Length
122 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TGGCTCGGATTCCTTTACAGAGG
3' ss Score
6.97
Exon sequences
Seq C1 exon
ATCTACAAAGGAGCCCACGCGGAGGAGAGGGTCCGGTGGCGCCTCCCCGAGGGAGCCGCCTTCTCCTGGCTGCCCCACCCAGAGAGGACCTTGGAAG
Seq A exon
GTAGGGGGAGCCTTGCCCGGTGCCCTGGGCTAGCCCAGCAGCACCCACACATCCCTCCAGGGCCCGCCGCCCCCGCTGACCTTGGGTCCTGACGCAGGGCTGTGGCTCGGATTCCTTTACAG
Seq C2 exon
AGGATTGTTTCGAGGTGACCAGGGAGGCCATGCTTCATTTGGGCATCGATGCCCCCACCCAGAACAACATCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675:ENSBTAT00000064679:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTACAAAGGAGCCCACGCG
R:
AAGATGTTGTTCTGGGTGGGG
Band lengths:
170-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]