HsaINT0108446 @ hg19
Intron Retention
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34869272-34869568:-
Coord C1 exon
chr17:34869472-34869568
Coord A exon
chr17:34869349-34869471
Coord C2 exon
chr17:34869272-34869348
Length
123 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GAACTTGGATTCTTTTTCAGAGG
3' ss Score
6.99
Exon sequences
Seq C1 exon
ATTTGCAAAGGAGCCAGTGAGGACGAGAGGCTCCAGTGGCACCTTCCTGAGGGAGCTGCCTTCTCCTGGCTGCCCAACCCAGAGAGGAGCTTAGAAG
Seq A exon
GTAAGGGGAGCCCCATCCAGCACCTTGCGCTGACCCAGCATCACCCACCCACTCTGTACAGAGCCTGCCTCCCTCGCATCTTGCTGCTGCTGACCTCTGCCCCGAACTTGGATTCTTTTTCAG
Seq C2 exon
AGGATTGTTTTGAGGTGACCAGAGAGGCCATGCTCCATTTGGGCATTGACACCCCTACCCAGAACAACATCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140-MYO19:NM_025109:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(18.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAAAGGAGCCAGTGAGG
R:
AAAGATGTTGTTCTGGGTAGGGG
Band lengths:
170-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)