HsaINT0108446 @ hg38
Intron Retention
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36513429-36513725:-
Coord C1 exon
chr17:36513629-36513725
Coord A exon
chr17:36513506-36513628
Coord C2 exon
chr17:36513429-36513505
Length
123 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GAACTTGGATTCTTTTTCAGAGG
3' ss Score
6.99
Exon sequences
Seq C1 exon
ATTTGCAAAGGAGCCAGTGAGGACGAGAGGCTCCAGTGGCACCTTCCTGAGGGAGCTGCCTTCTCCTGGCTGCCCAACCCAGAGAGGAGCTTAGAAG
Seq A exon
GTAAGGGGAGCCCCATCCAGCACCTTGCGCTGACCCAGCATCACCCACCCACTCTGTACAGAGCCTGCCTCCCTCGCATCTTGCTGCTGCTGACCTCTGCCCCGAACTTGGATTCTTTTTCAG
Seq C2 exon
AGGATTGTTTTGAGGTGACCAGAGAGGCCATGCTCCATTTGGGCATTGACACCCCTACCCAGAACAACATCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259:ENST00000610930:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(12.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAAAGGAGCCAGTGAGG
R:
AAAGATGTTGTTCTGGGTAGGGG
Band lengths:
170-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development