GgaINT0130566 @ galGal4
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:8137243-8137921:-
Coord C1 exon
chr19:8137825-8137921
Coord A exon
chr19:8137320-8137824
Coord C2 exon
chr19:8137243-8137319
Length
505 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
3' ss Seq
ACACCTGTTTGGCTTTTCAGAGG
3' ss Score
8.45
Exon sequences
Seq C1 exon
ATCACAAAAGGTGCCACTGCAGAGGAGAGACTGGCATGGAACCTTCCAGAAGGGGCTCACTACCGCTGGCTGCCAAATTCTGAACGAAACTTAGAGG
Seq A exon
GTAAAGATTAGTTTCACAGACTGTCCATCAATAACAGCTGTAACTTTGAGGGAAGGGAAGTAAAAATGCATCTGCCCCATTAAATCCCGTGACCCAGCTTAGGCAGCCAGCACTCTCCTGGGCTGGCCACAGCAGATTTTGCAAAGCCATCTGCATTAATGTGATTCAGTTTTAAGTTTTAGTTTGCACTGCTAATAGTTTTCACCTGACTTGAAACAGCAGCTTCTGGCCTAGCGCATTTGCATTGCTCTGTGGTTATGGTAAGAAATCACCTTGTCTTTGGATGCGCTTCAGCAACCTGCTGCCCAACTCCACAGCCCCAGAGCCAGCAGTAAATCTGCAATTTGATTTTCCAACTTCTGATTTGGGATTTACCAAAAGAACAGCTGGCCTCCTCGATCTCTTCTGACAATTCCAGCTGAACTGGACATGGAGGAGATTGTTCCACATGCCTCCATCTGTGTGCGTGGCTTTCTTACTAAATAACACCTGTTTGGCTTTTCAG
Seq C2 exon
AGGACTGCTTCGAGGTGACCAGAGATGCAATGTTTCACTTGGGCATTGACCACTCCACGCAGAACAATATTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]