DreEX6009015 @ danRer10
Exon Skipping
Gene
ENSDARG00000073761 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr5:3644950-3650110:-
Coord C1 exon
chr5:3649972-3650110
Coord A exon
chr5:3646607-3646683
Coord C2 exon
chr5:3644950-3645040
Length
77 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTCGTGTCTGAGCAGAAG
3' ss Score
5.27
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
GTTATGATTTGTTGTCTGACTGTTTGTTTCTTTCATTTAAAGATGATGAAGGGAGCCACAGAGCAACAGAGACTGGAATGGATGCTGCCTCTGGAGCAAGACTTTGTTTGGCTGCCACATGCAGAGAAAACTTTAGAAG
Seq A exon
AAGACTGTTTGCAAGAGACGGTGGAAGCCATGATCAGCCTTGGCATTGATGAAGGGAAACGGGCACAGATATTCAAG
Seq C2 exon
ATTCTTGCAGGTCTTCTGCAGTTGGGGAATGTGGACTTCAGTCCCGCACCAGAAGAGGCTCAGCCATGTGATCTCAGTGGACAATCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073761-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(7.6=80.4)
A:
PF0006316=Myosin_head=FE(5.2=100)
C2:
PF0006316=Myosin_head=FE(6.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCACAGAGCAACAGAGAC
R:
TGTCCACTGAGATCACATGGC
Band lengths:
170-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]