RnoEX0057244 @ rn6
Exon Skipping
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72212260-72214264:+
Coord C1 exon
chr10:72212260-72212356
Coord A exon
chr10:72212470-72212546
Coord C2 exon
chr10:72214174-72214264
Length
77 bp
Sequences
Splice sites
3' ss Seq
GTGACATGGATTCTTTTCAGAGG
3' ss Score
6.19
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
ATTTGCAAAGGAGCCACCAAGGAAGAAAGGCTCCAGTGGTGCCTCCCTGAGGGAACTGCCTTCTCCTGGCTACCCAATCCAGAAAGCAGTCTGGAAG
Seq A exon
AGGATTGTTTCGAGGTGACCAGAGAGGCCATGCTCCATCTGGGCATCGACACCCCCACCCAGAACAACATCTTTAAG
Seq C2 exon
GTCCTAGCTGGACTACTGCACCTTGGCAATGTCCACTTCGTTGACTCAGAGGATGAAGCCCAGCCCTGCCAACTGATGGATGGTACCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852_MULTIEX1-4/18=3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
PF0006316=Myosin_head=FE(3.8=100)
C2:
PF0006316=Myosin_head=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAAGGAAGAAAGGCTCC
R:
GGTACCATCCATCAGTTGGCA
Band lengths:
171-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]