HsaEX0041094 @ hg38
Exon Skipping
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36511365-36513725:-
Coord C1 exon
chr17:36513629-36513725
Coord A exon
chr17:36513429-36513505
Coord C2 exon
chr17:36511365-36511455
Length
77 bp
Sequences
Splice sites
3' ss Seq
GAACTTGGATTCTTTTTCAGAGG
3' ss Score
6.99
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
ATTTGCAAAGGAGCCAGTGAGGACGAGAGGCTCCAGTGGCACCTTCCTGAGGGAGCTGCCTTCTCCTGGCTGCCCAACCCAGAGAGGAGCTTAGAAG
Seq A exon
AGGATTGTTTTGAGGTGACCAGAGAGGCCATGCTCCATTTGGGCATTGACACCCCTACCCAGAACAACATCTTTAAG
Seq C2 exon
GTCCTAGCTGGACTGCTGCACCTTGGCAATATCCAGTTTGCTGCCTCCGAGGATGAAGCCCAGCCCTGCCAGCCGATGGATGATGCCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259-'38-55,'38-45,39-55
Average complexity
S
Mappability confidence:
100%=100=91%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(12.0=100)
A:
PF0006316=Myosin_head=FE(6.1=100)
C2:
PF0006316=Myosin_head=FE(7.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAAAGGAGCCAGTGAGG
R:
CATCATCCATCGGCTGGCAG
Band lengths:
181-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development