RnoEX0057240 @ rn6
Exon Skipping
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72223812-72225172:+
Coord C1 exon
chr10:72223812-72223978
Coord A exon
chr10:72224087-72224216
Coord C2 exon
chr10:72225087-72225172
Length
130 bp
Sequences
Splice sites
3' ss Seq
AATAGATTCCCTTCTCTCAGCTA
3' ss Score
4.2
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AGCAGCCTCTGTGTGCCAAGGAGGCCACACTGCAGCCTCTACTACAGGACATTCTCCATGCTCTGCCAGCTTTAATTCAGACAGCAACCACTCCCAGTGACCCAGCTAAGACTGCACAAATCCCACTATACTGTGGCAGGACAAAGATTTTCATGACTGACTCCATG
Seq A exon
CTAGAGCTTCTGGAATGTGGGCGTGCCCAGATGCTAGAGCAGTGTGCCCGCTGCATCCAGTGTGGCTGGAGGCGACACCGGCTCCAAAAGCAGGAGAAGCAGAGGCGGGCGGCCGTGATCATTCAGGCAG
Seq C2 exon
CTTTTCGGTCCTGGTTAACTCGGAAACACATCAGAAGGTTACACATAGCTGCCACAGTCATCAAGCACGCATGGCATAAGTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852_MULTIEX1-17/18=16-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.1=0.0)
A:
PF0061222=IQ=PU(42.9=20.5)
C2:
PF0061222=IQ=PD(52.4=37.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTCTGTGTGCCAAGG
R:
ACTTATGCCATGCGTGCTTGA
Band lengths:
246-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]