MmuEX0030469 @ mm9
Exon Skipping
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84720738-84721807:+
Coord C1 exon
chr11:84720738-84720904
Coord A exon
chr11:84721008-84721137
Coord C2 exon
chr11:84721722-84721807
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCGGCTTCCCCTTCTCTCAGCTA
3' ss Score
7.46
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
AGCAGCCTCTGTGTGCCAAGGAGGCCACACTGCAACCTCTACTACAGGACATTCTCCATGCTCTGCCAGCTTTAATTCAGACAGCAGCCACTCCCAGTGACCCGGCTAAGAACACACAAATCCCACTGTACTGTGGCAGGACAAAGATCTTCATGACTGACTCCATG
Seq A exon
CTAGAGCTTCTGGAATGTGGGCGTGCCCAGATGCTGGAGCAGTGTGCCCGTTGCATCCAGTGTGGCTGGAGGCGACACCGGCTCCAAAAGCAGGAGAAACAGAGGCGGGCTGCCGTGCTCATCCAGGCTG
Seq C2 exon
CTTTTAGGTCCTGGTTAACTCGGAAACACATCAGAAGGTTACACATAGCTGCCACGGTCATCAAGCACGCATGGCATAAGTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0061222=IQ=PU(42.9=20.5)
C2:
PF0061222=IQ=PD(52.4=37.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTCTGTGTGCCAAGG
R:
ACTTATGCCATGCGTGCTTGA
Band lengths:
246-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: