DreEX6009025 @ danRer10
Exon Skipping
Gene
ENSDARG00000073761 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr5:3625406-3633049:-
Coord C1 exon
chr5:3632910-3633049
Coord A exon
chr5:3630657-3630786
Coord C2 exon
chr5:3625406-3625491
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCTTATGATGTGTTGTGCAGTTG
3' ss Score
6.19
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GCCCTGAGATGGGATCAGTTGTAGAAGATGTGCTCAGTGTGGTCATCAAAAAACACTCCCCAAACTCCACCTTCAGTCCTGATGACAACAACAACATGGTTCATTGTGGGAGAACAAAAGTCTTCCTCACGCACTCCCTG
Seq A exon
TTGGAGATCCTGGAGGAGCACAGGAACAGAGTGCGCTCACAGAAAGCGTTCAGCATCCAGTGCTGTTGGCGAAGGCACCAACAACGCCAGCGTTTCCTCCGGACACAGGCAGCCACATGTATACAAGCAG
Seq C2 exon
GTGTGAGATCCTGGAGGGTCAGAAGAGAGATTAAGAAGTGGCATAAAGCTGTATCAGTCATCCAAACCAAGTGGAGGCGCTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073761-'14-16,'14-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.177 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(33.6=91.5)
A:
PF0061222=IQ=WD(100=45.5),PF0061222=IQ=PU(38.1=18.2)
C2:
PF0061222=IQ=PD(52.4=37.9)
Main Skipping Isoform:
ENSDART00000159368fB553
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGATGGGATCAGTTGTAGA
R:
AGCGCCTCCACTTGGTTTG
Band lengths:
219-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]