BtaEX0023515 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13160874-13162581:-
Coord C1 exon
chr19:13162466-13162581
Coord A exon
chr19:13162239-13162368
Coord C2 exon
chr19:13160874-13160959
Length
130 bp
Sequences
Splice sites
3' ss Seq
AGCGGATGCCCTTCCCCCAGCTC
3' ss Score
4.48
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGTGCCCTCCATGCACCGAGCCGGCCACACTGCAGGGCCTCCTCCAGGAGATCCTCCACACACTGCCAGCCCCACTGCACTGCGGCAGGACCAAGGTGTTCATGACCGACTCCACG
Seq A exon
CTCGAGCTCCTGGAGCGTGGGCGTGCCCAGGTGCTGGAGCAGTGTGCCCGCCACATCCAGCGTGGCTGGAGGAGACACCGGTGCCGCACGCAGGCCAGGCGGAGGCGGGCAGCTGTGCTCATCCAGGCAG
Seq C2 exon
CCGTCCGTTCCTGGCTGACTCGGAAGCATATCCAGCAGCTGCACGCGGCTGCCACGGTCATCAAGCGTGCGTGGCGAGAGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675-'36-43,'36-42,38-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(4.9=87.2)
A:
PF0061222=IQ=PU(42.9=20.5)
C2:
PF0061222=IQ=PD(52.4=37.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTCCATGCACCGAG
R:
CTCCACTCTCGCCACGCA
Band lengths:
199-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development