GgaEX1038025 @ galGal3
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8081481-8082570:-
Coord C1 exon
chr19:8082393-8082570
Coord A exon
chr19:8081748-8081877
Coord C2 exon
chr19:8081481-8081566
Length
130 bp
Sequences
Splice sites
3' ss Seq
GGCTCGTATCCCCAACACAGCTA
3' ss Score
3.15
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
CACTTCATTTGCAGGTGAGACTGCAGCGGTGGATGACAACAAAGCATCACGTTCTGTCATCGCTGAGATCCTGCAGAATGTTGTTACAGGACAAAGTGCTGCTGAGCCCACAGGGAAGGGATCAGAGAATACTTCAGTGTATTGTGGCAAAACCAAAGTATTTATGGCTAATTCTGTG
Seq A exon
CTAGAGCAACTTGAAGCTAGAAGAGCAGAAGTGTTAAACAAGAAAGCATTTTGCATTCAGTGTTTCTGGAGGAGATTTAAACAGAAGAAACTTGCAAAGGAGAGAAGGTGTGCAACCCTCATCCAAGCAG
Seq C2 exon
CTATTCGCTCCTGGTTAGCCAAGAACCGCTTCCAAAGGATGCGCAGGGCTGCAGATGTCATTAAGCGTGGATGGAGGAAATGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(7.3=92.7)
A:
PF0061222=IQ=PU(42.9=20.5)
C2:
PF0061222=IQ=PD(52.4=37.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCGGTGGATGACAACAAA
R:
TTTCCATTTCCTCCATCCACGC
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]