RnoINT0096968 @ rn6
Intron Retention
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72224087-72225172:+
Coord C1 exon
chr10:72224087-72224216
Coord A exon
chr10:72224217-72225086
Coord C2 exon
chr10:72225087-72225172
Length
870 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GATGTCTGCTGTTTGCTTAGCTT
3' ss Score
4.63
Exon sequences
Seq C1 exon
CTAGAGCTTCTGGAATGTGGGCGTGCCCAGATGCTAGAGCAGTGTGCCCGCTGCATCCAGTGTGGCTGGAGGCGACACCGGCTCCAAAAGCAGGAGAAGCAGAGGCGGGCGGCCGTGATCATTCAGGCAG
Seq A exon
GTAGGTGAGCTGGTCCATGGCGGTGTGGCCAACCATCCTGGCAGGCTTATCTCATAAAGGCCAAGTATAGTGCCACACCTGGGAGCCCAGCACTGGGGGCCTGAGAAGGAAGATCTCGTTTGGTGCCAGCCTGGACTACGTAGAGGCCTTGTCTCCAAGAAAACAATATGAATTTGTTTTTTTGCAATGCCACAAGTCAAACCCAGGGCTTCAGTCATGCTAGGCAAGAGCTATACCACAGAGGTACAAATCTACACAAACGAAAGGTTGTAAAGGCACAGATAACCCAGATTCCTCTTCCTTAGGCACTGCTGTGGACTGAGCCTGAGATGGGCCCTTGGCAGTGAGAGCTCCCGATGGCCCTTCAGTGTGTGGGTATCTGCAAGACTGAACAGTGTTGCATTTTTTAAGATTTACTCCCAGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTACCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAATAGAAAAGAAAAAAAAAAAAAAAAAAGATTTACTCCCATGTCAGGAGGCAGGGGGTAGGGGGCCTATATGTGCGTGTAAGACTGTGTTACCTTATGCATGCAGCTGCCCTTGGAGGCCAGAAGTGAGAGTCAGATCTCTTGGAACTGGAGTCAAGAGAGTGTGAACCACCATGTGGGTGCTGGGAACCAAATCTGGGTGTTCTGCAAGAGCAGTAAGTGCTCTTAACCACAGAGCCATCTTTCCAGCCCCTCAGGAACGACTTTTGTGTTGACAGAGTGTGTCACTAGAAGAACAGATTTCATACTTCCCTCTGGTGCTGGCCACGCAACTAATAGTTCTAATGGTTTTGATGTCTGCTGTTTGCTTAG
Seq C2 exon
CTTTTCGGTCCTGGTTAACTCGGAAACACATCAGAAGGTTACACATAGCTGCCACAGTCATCAAGCACGCATGGCATAAGTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852:ENSRNOT00000003886:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PU(42.9=20.5)
A:
NA
C2:
PF0061222=IQ=PD(52.4=37.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGCTTCTGGAATGTGGGC
R:
TCTCCACTTATGCCATGCGTG
Band lengths:
215-1085
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]