GgaINT1018644 @ galGal4
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:8127855-8128251:-
Coord C1 exon
chr19:8128122-8128251
Coord A exon
chr19:8127941-8128121
Coord C2 exon
chr19:8127855-8127940
Length
181 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TCTTTTAATTAAATCTTCAGCTA
3' ss Score
5.59
Exon sequences
Seq C1 exon
CTAGAGCAACTTGAAGCTAGAAGAGCAGAAGTGTTAAACAAGAAAGCATTTTGCATTCAGTGTTTCTGGAGGAGATTTAAACAGAAGAAACTTGCAAAGGAGAGAAGGTGTGCAACCCTCATCCAAGCAG
Seq A exon
GTAATTTGATGAGAGTGTGGCTGGACATAATTTAACTAGGAACATTTCCAGCTACACTGGGTATTTAAAGAATGGATATGCTACCTGAACAAGGAGACGACTTAAGTGCCATCTTTCTTACACTGTGTGCAACAGCTGCTGAGGTTCTTTGTACTTAGATTTCTTTTAATTAAATCTTCAG
Seq C2 exon
CTATTCGCTCCTGGTTAGCCAAGAACCGCTTCCAAAGGATGCGCAGGGCTGCAGATGTCATTAAGCGTGGATGGAGGAAATGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PU(42.9=20.5)
A:
NA
C2:
PF0061222=IQ=PD(52.4=37.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAACTTGAAGCTAGAAGAG
R:
CCATTTCCTCCATCCACGCTT
Band lengths:
211-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]