DreINT0014906 @ danRer10
Intron Retention
Gene
ENSDARG00000073761 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr5:3625406-3630786:-
Coord C1 exon
chr5:3630657-3630786
Coord A exon
chr5:3625492-3630656
Coord C2 exon
chr5:3625406-3625491
Length
5165 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
TCTGTGTCTCTTTATTACAGGTG
3' ss Score
11.85
Exon sequences
Seq C1 exon
TTGGAGATCCTGGAGGAGCACAGGAACAGAGTGCGCTCACAGAAAGCGTTCAGCATCCAGTGCTGTTGGCGAAGGCACCAACAACGCCAGCGTTTCCTCCGGACACAGGCAGCCACATGTATACAAGCAG
Seq A exon
GTTAGCATTTAGTATTTGTGATCATGGAGCACAACTTTTGCTGCACTGGTACAGCGAGGAAATACGTATTGAACACGTCACCATTTATTTCAGAATACATATTTCTAAAGGTGCTGTTGACTTGAAATTTTTCCCAGATGTTGGCAACAACTAAAGAAATCCATAAATGCAAAGAAAACAAAACTAATTAGTTTACAAATGAAGTTATGCATAATACAATGAAATGACACAGGGAAAAAGTATTGAACACATGAAGAAAGGGAGGTGTAGAAAGGCAGTGAAAGCCCAGACAGCAGCTGAAATCTCTCAGTAGTTCTTTAGCAGTAATCTGCTCTTATTCAGTGTAAATTAATTAATTATAGATTTTTTTTTTATACCAAAAATGATTCGAACATTAAGGCCCTGTTCACACGAACATGGGTATTTTCTAAACCACACTTTTTTCTATGCGGTTTCGCTGTTTGTCAGTATCTGGTGACTGAAACTCCAGCCAGAGTGAAGATTTTCCATAACAATAAGTATAGTGTATTCATGTGGACATTACAGATTACAGTTTTCACCTTATGATGTCATCGTGCATGCTGTTTTCTCCTTTTCTGATTGGCCAACACGGCTGGATTCACACCAAAAGCTGAAGATGCAAAGGAGGCAAAATTCTGCACATTTACGGCAAACACATCATGTATTTCATGTAATTCGTCTGCGAGACTGTAATCCGCCTTTGTTCTCACGTTTGCATTGACTTGTATGCAATTTACTTAGTTTCCAGTTTGGTGTGAACCCAGCATAAAAATCCAGCATAAAAATGTCATTATCGCCGCCTGTTGGTTCGGAGTAGAGCTTAGATTGAGGCCCAAAAATTAAACCCTACCCGAACCCGTGCATCTCGTGTCCGAGCCCAACCCGGTCCAACACATTAACTGTAATTATGAGCCCGATTTTTTTTTATTTTTTTTTTTATTAAGCCTCTTCAGCTGCTCCAGAACGCAACAGCACGAGTGGTCTTTAATGAACCTAAAAGAGCACATGTCACTCTGCTGCTCATCCGTTTGCACTGGCTGCCAGTTGCTGCTCGCATCAAATTCAAAGCTCTGATGTTTGCTTACAAAGCGACCTCTGGCTTTGCTCCTTCTTATCTGCTCTCACTTCTGCAGATTTATTTACCCTCCAGAAACTTGTGTTCTGTGAATGAACGTCGCCTCGTGGTTCCATCCCAAAGAGGGAAGAAATCATTTTCCCGAACGCTCACGCTCAATCTGCCCAGTTGGTGGAATGAACTCCCTAACTGCATCAGAACGGCAGAGTCACTCGCTGTCTTCAAGAAACGACTAAAAACTCAACTATTTAGTTTCCACTTCCCTTACTAATCTGCAATTGCCTCTCTGGCTATATCACTAACTGTACTCAAAAAAAAAATAAAATTACTAATGCTCTCCTTCTTAGATTTTACAGACCTGAAACTTGCCTACAGCACTTATTCATTGTTGCTCTTATAGTTGTGTAAGTTGCTTCCTTGTCCTCATTTGTAAGTCACTTTGGATAAAAGCATCTGCTAAATGACTAAATGTAAATGTAAATTTTATGTTTATTGTGAACATTCAATTGAATACAATCATAGAGCATTTCAAGGTACATTGGTATCTCAATATGTGCCCTTAAGTGGTGTAAAGATTACGTACATTGTCAGGTGTACTTACTACACAGTAGTATTTAAATTTTGTCAATTATAAAATGAACAGCAGTGTAAAGAGAATTTTTGTTTTTTGAAATAAATAAATAAAATAATAATAAAAAAAAAATAATAAAAATAAATAAAATAAAATAATAATTAAAAAAATTTAAATTAAAGCACTATTTACATCCAGGGTAAGAACGCTTGTCATAATATAATTCCTTCCAGAATAATCTTAACTGACCATCTTCATCATACACATGAGGATATCACGCATTACAATATAAGTATAACTATATATATATGTACATACATTAGCATATATTTATCTATCAGATCATAATCTTCTATGCATTTATAGCAACAAAGTCACGTCTTCTAACTAAAATATATTCAACCCATTTCCTCCATTTTCTCAGGAATAAATCCTTCTTTAAATTGACGACAAAAGTGATGTTTTCCATTGTGTAGATTTCAATAGTTACATCTATCCAATTACTAAGGGTTGGTCGATCTTGCTGTAGCCATTTGCGAGTGATTGCTTTTTTGCTGGCAGCCATAAAGTATTTATTTTCTGCCGTTACGGTATCTGGATTCACACAGTTAAAATATAATAACTTACTTTCTGGAGGTATATCTATTTCAAATATATGTTTGAGAGCCTCCTGTATTTCTTTCCAATATTTCTGAATATACATGCATTCCCAAAATATATGATAATGGTTTGCTTTGTTGCATCTGCAGTTATGCCAGCAATTTGGGGTCTTATTTGTATATTTGGCTATTAGTGCTGGTGTTTTGAAATATCTAATAATGTTTTTGCAACAGTTTTCTTTCCAGTTTAATGAACTTGCTGATTTTCATTGAAATTCCCATACATTTGTCCACTCCTCATCAGTAAAGGTTGTTCCACTTTCCGTCTCCCATTTTTCTTTTATATAACTCGTGGAGTGTGTTTTCATACTTCTCAGACTCTTATAAATCAGAGAGACTATTTTGTACTTTACACCTGATGTGTGTGCTTTTAATTAGATCTATCAATGGATTCTGGTTATCTTCAAGTTTTCCTTTTATTTTCTGATCATAAAAGTTTCTATAAAAATCTTGATTTTCAAGTAGAAAATTGTTAAACGGACTATGTTTTAATACGTGGGCAGTTATGACAGCCGTTCTCAAATACAATTCTGAGTTGTTTAAACTACAGGAATTAGTTTAGAGCAGGGGTCACCAACCTTTATGAAACTGAGAGCTACTTCTTGGGTACAGATTAATGTGGAGGGCTACCAGTTTAATAAACACTTTTCAAATAACAAATTTGCTCAATTTACTTTTAATTATACTTTATGTTTTTGGTAATAATTAATGATATTTATCCATGTGAAGACACTGATCATGTTAATGATTTTCACAAAAGTGATCAACAATGATTTAACAGGGTAGGAAATAACCTGTATTTAATGTATCAATGTGCAGCACTTTATTTTTATATATCTCTGCAAATATTTACATTATTAAATGATTACTTCTATATTAGATGAAGCTTACTGGTAAGTGGCGCTATGGTGAGCTTTTTTAGAACAGGCCTGCGGGCAACACATGTGATCCTCGCTGGCTACCTGGGCACCATGTTGGTGACCCCTGGTTTAGATTGATCTTACCTCACTCTCTGGGTTATGCTTGAAGAAGTGACAAAAGAGGACATCGAAGGCTGACTATCATCCTTTCTGTACCGGCCAACCCACGCGTTTTTTTTTTTACTGTGGTATCCCGCTCTTGTCCCGTTCAAGCATTTCCCGTATCTTTCTATCAAAAGTGAAAGTAGCATCAAAGAGCTGGTCTTAAATGTGTTAAGAGCTGTTCAAGATAATTATGCTTTGGCTTCGTTTTGGCCTGAAACCAAGTTGAATTGAATATAAAAACAGCCCCATTCACTATGCAATCTCTGAATTAGTCAATTCATGTAACGCTCGTTTCACACTACATGCTCAGGAAGTTGCTGCGAGCCTTGGTGCAGAAGAAAAGTAAACATTAAGTATATTCATATCATCTCGCTCTCACATTACTCCTGTACTTCAGCAGTTACACTGGTTGCCTGTTAAGTCACGCATCGATTTTAAAACCTTGATTTTAACATACAAAGCTGTTCATGGTTCTGCACCTGATTATATATGTGACCTGATATCGACCTCCTCTTCCTCTCGCAATCTACGTTCTGCTTCGGGGATCACCTTGTATCAGCCCCGTGGCAAACTCAGCAGCATGGGAGGCAGGGCATTCTCTTATCGTGCACCTAAATTGTGGAATGCTCTCCCCACAAACATCAGAAACGCCAGTTCCCTGGACTGATTTAAGACACTTCTTAAAACTCATCTTTTTATTATTGCTTATAACTTATGAGGGCTTTTTTAATATATGTATATTTATCATCATTATCATTCTTACTTGTTTGTGTTTTTCATGTTCTTCTGTGTGTTGATGCTCTTGTTAGCGCTTTGAGTTAGAGAAAAGTGCAATATAAATAAAAGGTATTGTTATTATTATTATTATTATCATTATCATTATTTATTCATTCATTCATTTTCTCGTTGGCTTAGTCCCTTTATTAATCCGGGGTCGCCACAGTGGAATGAACCGCCAACTTATCCAGCAAGTCTTTTACGCAGCGGATGCCCTTCCAGCCGCAACCCATCTCTGGGAAACATCCACACAAACATTCACACACACACTCATACACTACGGACAATTTAGCTTACCCAATTCACCTGTACCACATGTCTTTGGACTGTGGGGGAAACCGGAGCACCCGGAGGAAACCCACGCGAACGCAGGGAGAACATGCAAACTCCACACAGAAACGCCAACTGAGCCGAGGATCGAACCAGCGACCTTCTTGCTGTGAGGCGAACGTGCTACCCACTGCGCCACTGTGTCGCCTCATTATTTATGAGACAAACGTCTGCGTGCTACCTCTGCTCTCTGGCCCGGCCCGAAGATAGTGGCAGGAAATATTGGCCTGTCAAGTCTGGGCTCGGGCAGAGAGTCTATACTCTAATTCGGCATGCCCTAATATGCATCACAGTGCATTTTTGGGCTTTTATGTGGACCAGGATTTAAAAAAAAAAAAACGAAAGCGGGGAAAACCCTGTTTACAAAATACTTGTGTATGTGTGGTTTTGTTGTCCACAATGTCCAGGGTCACATTGTTATTTTGGGATTACAGGTAGAGTGGTTGTGTAACCGATGCTGCTGCCTCAGTCTTGTCTGCCAGTACTGTTGAGTTCTCTCCAACAACTACTTGGCTAACGGAGCAGAAATCTGTCTAGACACTAAACCCAGATCTCTGACCTTCCTCCTGATTATCCCTTAAACCCTATACAGAGCAGATGAAGCACACCCGAGCCAAACACTTGCTTTATTGAGATCTAAAAAGCCAAAAGACAACCCCGTCATGCTCCAGTTAAATTCAATCTCTTTCTGTGTCTCTTTATTACAG
Seq C2 exon
GTGTGAGATCCTGGAGGGTCAGAAGAGAGATTAAGAAGTGGCATAAAGCTGTATCAGTCATCCAAACCAAGTGGAGGCGCTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073761:ENSDART00000111453:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=45.5),PF0061222=IQ=PU(38.1=18.2)
A:
NA
C2:
PF0061222=IQ=PD(52.4=37.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]