GgaINT0130580 @ galGal3
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8081481-8081877:-
Coord C1 exon
chr19:8081748-8081877
Coord A exon
chr19:8081567-8081747
Coord C2 exon
chr19:8081481-8081566
Length
181 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TCTTTTAATTAAATCTTCAGCTA
3' ss Score
5.59
Exon sequences
Seq C1 exon
CTAGAGCAACTTGAAGCTAGAAGAGCAGAAGTGTTAAACAAGAAAGCATTTTGCATTCAGTGTTTCTGGAGGAGATTTAAACAGAAGAAACTTGCAAAGGAGAGAAGGTGTGCAACCCTCATCCAAGCAG
Seq A exon
GTAATTTGATGAGAGTGTGGCTGGACATAATTTAACTAGGAACATTTCCAGCTACACTGGGTATTTAAAGAATGGATATGCTACCTGAACAAGGAGACGACTTAAGTGCCATCTTTCTTACACTGTGTGCAACAGCTGCTGAGGTTCTTTGTACTTAGATTTCTTTTAATTAAATCTTCAG
Seq C2 exon
CTATTCGCTCCTGGTTAGCCAAGAACCGCTTCCAAAGGATGCGCAGGGCTGCAGATGTCATTAAGCGTGGATGGAGGAAATGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PU(42.9=20.5)
A:
NA
C2:
PF0061222=IQ=PD(52.4=37.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAACTTGAAGCTAGAAGAG
R:
CCATTTCCTCCATCCACGCTT
Band lengths:
211-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]