MmuINT0104097 @ mm10
Intron Retention
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84907506-84908305:+
Coord C1 exon
chr11:84907506-84907635
Coord A exon
chr11:84907636-84908219
Coord C2 exon
chr11:84908220-84908305
Length
584 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
CGTCTGTGCTGTTTCCTTAGCTT
3' ss Score
7.53
Exon sequences
Seq C1 exon
CTAGAGCTTCTGGAATGTGGGCGTGCCCAGATGCTGGAGCAGTGTGCCCGTTGCATCCAGTGTGGCTGGAGGCGACACCGGCTCCAAAAGCAGGAGAAACAGAGGCGGGCTGCCGTGCTCATCCAGGCTG
Seq A exon
GTAGGTGGGGCTGATCCCGTATGGCGGGTGTGACCAACACAAAGGCCAAGGGTAGTGTCCACACCTGTGAGCCCAGCTTTGGGGAACTGAGATGGATCTTAAGTTTGATGCCAGCCTGGGTATGTAGAGTCCTTGTCTCCAAGGAAAAAATATGTAACTTGTCTTTTTGTAAGTACTATACCACAGAGCTACAAATCCATACAAACAAACAAACAAACGGTTTTAAAGGAACAGATAACCCAGATCCCACTCCTTCCTTGGGCACTGCTGAGGACTGAGTCTGAGACAGGCCCTTGGCAGTTAGAGCTCCCAGTCTAAGGCTGTATGTGTTACCATATGCATGCAGGTGCCCATGGAAGCCAAAAGGGAATCAGATCTCTTGGAGCCAAAAGAGATCATGAACCACCATGTGGGTGCTGGGAACCAAATCTGGGTGTTCTGCAAGAGCAGTAAGTGCTCTTAACCACTGAGCCAGCCTCCCTCAGGAATGACTTTGTACTGACAGAGTGTATCCCTGGAAGAGCAGATTCCATACTTTTACTCTGGTTCTAATGGTGGTTTTGACGTCTGTGCTGTTTCCTTAG
Seq C2 exon
CTTTTAGGTCCTGGTTAACTCGGAAACACATCAGAAGGTTACACATAGCTGCCACGGTCATCAAGCACGCATGGCATAAGTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527:ENSMUST00000093969:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PU(42.9=20.5)
A:
NA
C2:
PF0061222=IQ=PD(52.4=37.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGCTTCTGGAATGTGGGC
R:
TCTCCACTTATGCCATGCGTG
Band lengths:
215-799
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types