HsaINT0108454 @ hg38
Intron Retention
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36499075-36500959:-
Coord C1 exon
chr17:36500830-36500959
Coord A exon
chr17:36499161-36500829
Coord C2 exon
chr17:36499075-36499160
Length
1669 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTTCTGGGCAAACCTCTTAGCCA
3' ss Score
0.56
Exon sequences
Seq C1 exon
CTGGAGCTTCTGGAATGTGGGCGTGCCCGGGTGCTGGAGCAGTGTGCCCGCTGCATCCAGGGTGGCTGGAGGCGACACCGGCACCGAGAGCAGGAGCGGCAGTGGCGGGCCGTCATGCTCATCCAGGCAG
Seq A exon
GTAGGTGGGCAGGTCACCTGTCAGCACTGCTCACAGACCCCACAGGATGTTGGTTTCCTTTGAAACATAGCTCGTCGAGTCCCCATCTCCTGAAGCTGTGTCCCAGCCTGAAGAGATGTCCCTGTGGTGTGCTGGGATTCAAATTCCCTGTCCCCCTCACTCATAACGTCTCTCCAGTTCAATGGAAACCAAGTCACTCCACAAACAAAGGTGCTCTGTAAGAAGTGGAGGCTAAGCGTTGTCTAAGCGTTGTCTTTAATTCCTTTCTCAGACCCTGACAGCTGTTTAGGCCAACTTTTTTTCCCTTTATGACAACTCAAACCATTACCTGCTGGGCTCTAGGGCTGGAATGAATTTAAGGAGAAGGTAAAAACCAAAAGGAGTTCATCAGATGAAAAGATGTATTAACCAACATGTTCATAGTGGTCTTATTTTGAAAAGGAAAAGTGTTGGAAAGAACCCAAATATCTAACAGTGGTGACATCATGGCCAAATGATGGACTGGACCATCCCTATGATGCAGCTAAGTGTTTTTGAAGAATATTATAAATTTAATGGAGAACCACTTCCAAAATGATATTCATACCTAGATGTCAAACTACATATTAAGGGCGATGCCCTCCTTTTAAGGTGTGTTTGTGTGTGTGTAGGCATTAAAAAATTGTATAAGGAAGCTGGGCACAGTAGTTCGCTCCTGTAATCCCAGCATTTTGGGAGGCTGAGGTGGGAGGATCACTTGAGCCCAGGAATTTCATACCAGCCGGGCAACATGGCAAAACCCTTTCTCTACTAAAAATACAAAAATTAGCCAAGTGTGGTAGTATGCACCTATAATCCTAGCTACTCAGGAGGCTGAGGCAGGAGAATCACCTCAACCCAGGAGGCAGAGGTTGCAGTGAGCTGAGATTGCACCATTACACTCCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAACAACAAAACATAATTAACCGTGCCTGGTGGCACATGCCTGTAGTCCCAGTTACTCCAGAGGCTGAGGCAAGAGGATTGCTTGAGCCTGGGAGATTGAAGCTACAGCCTTACGGAGGCTACAATAAGCTGTTCGTGCCACTGCACTCCAGCCTGGGCAAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAAAAAGAAAAAGAATATGCTGAAATTGCAGAGAAGGGAATAAAAATTACCACCATCTATTAATTGTATCAGTGTTTGGGTATATGGTGATGTGAGATCAGGGATGCATAAAGCGAACAAATTCAACTGAGGATTAAAAACAAAACAAAAAAAAAAGTTTTTAAAGGCACAGACAATCCAGACCCCTCCCATTCCCTGGGTGCTGACCTGGACCCAGCCTGAGACGGGAAGTGATTGCTGGGCCCTCAGCCAGTCCTTCTCCCCAGTGCCCCTTCACTGTGTTGTGTAGGTGTATTCAAGTGTGTGGGCAGTGTAAGGAATGTTTAAAAGCCAATTTTGCCTTATGTATTGATTTTAGAACCTTATTTGTAGCAATTTATTGAAAAAAAAAAAACGTATTTGAAACTTTGACAGCAACTGTGGTGCTGCTGCAGCGAGGTCACTGACAGCTCTAATGGCCCCTTTATTATCTCTTTCCTGTTTCTGGGCAAACCTCTTAG
Seq C2 exon
CCATTCGTTCCTGGTTAACTCGGAAACACATCCAGAGGCTGCATGCAGCTGCCACAGTCATCAAGCGTGCATGGCAGAAGTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259:ENST00000610930:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PU(40.0=18.2)
A:
NA
C2:
PF0061222=IQ=PD(55.0=37.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCTTCTGGAATGTGGG
R:
CTCCACTTCTGCCATGCACG
Band lengths:
215-1884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development