RnoINT0096957 @ rn6
Intron Retention
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72214614-72216536:+
Coord C1 exon
chr10:72214614-72214785
Coord A exon
chr10:72214786-72216462
Coord C2 exon
chr10:72216463-72216536
Length
1677 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CTATGCTTTCCCATCAACAGGCT
3' ss Score
9.17
Exon sequences
Seq C1 exon
GCTCTGTCAGGACCTCAGCCTTGCTGCTGCAGCTCCCAGACAACATGCTGCTGGAGAGCATGCAGATTCGAACCATCAAGGCAGGCAAGCAGCAGCAGGTGTTCCAGAAGCCCTGCTCCAGAGCTGAGTGTGACACACGCAGAGACTGTCTGGCCAAACTGATCTATGCACG
Seq A exon
GTGAGTGATTTACTCTGGGCCTTCACTTCCCCATAGCTTCTTAGCCTGTCTGGGATTGGACCACACATTGTCAGGCAGTAGATATAGGTCCAAAGTGGAGGAGGCTGGAGGACACAGACCAGTTGCTGGGCTCCCAGGAGATGCAGGGCACGGCTTCCACGTTTGCCCTAACACTGCCTTGGGCTCTGCCTGTACTGAATGGAGAAGCTGCTCCAAAGGCGATCTCCACCTTTACAGGTCCAAGCTCAGACTGCTGAGTAGTAGATGGGCTCCTCTGTCACCGTACCCTTCATCCGGGCAGTTAGAGAGATGGTAGTGGAGCCAGAAGCTCAGTTCCCAGTCAGTGCCCCATATAAGAAGCTGGAGCCCAGTGCAGCAGGGAAGGTGGTCCTCACCTTTCTTGGGACATGACATAGGCACCTCCGTCCTCTGACCATGTGGTCAAATACTGTGTCATCTTGAGTTCTGAGAACCCTCAGAGTACCCTGTAAAGGCTCTCAGGAGCTCAGGCTCCCCTGAGATTATGACAGCCGGTGTTTATATAGGTATGTGAGATCTTGGACAACCCTGTTCAGAGCCAGGAATCTAAGGTCTTCTAAGCCCATGCCAACTAGAGACAGGTACTTCTGCCTCAAAGCAGGTTTTAGGTCAGAAGTTGTGGGGGTTTTGTATTTTGGGTTATTTTAAGACAGGGTCTCACTGTGTAACTCTGGCTGGCCTGGACCTCACTGTCAGTGCTGTAATTAAAGGTGAGTGCAACTACACCCAGCAGCCAAAGGATTTTTAAGTAACTCTAAAGCTACACAATGGAAATTTAGAACAAGCTTCTAGCTAAAGAGCATTTTACACGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTAGCTCACAAACATCTATAATGAGATCTGGGGTCATCTTCTGGCCTGCAGGCACACATGCAGATAGAAAGCTGTATTATGTATACATAATAAATAAATAAATATTTTTTTAAAAAAAGAGAGAGATTACTTAAGTATGCCTTAAGAGAAACTAAGGCATAGCAGCCACCTCTAAACCCAGCACATTTTAGGCTGAAGTAGAGGTTGCTAGTTCTATACTAGAGTCTATATGTAGGCCCTGTTTCCAAAATGGGGAAAATGGGGAAGGCAATGTGTAGGAAAGGGGTCTGTTGAACAGTCCTGTGCTTGGTATCACCTTGTAGAGCGGTCTCATTTTCTCGGGGCCAGCAACAATTTCAGAGTAGGGTGTGCCATTATTATTGTGATTTGGCCCCCTTGTGCAGGCTTGAGAAGAATGTGGCAGCTCTGTAAGCATGTTCTGGGGCCATTCAGTGTACTCAGCTTCTTACAAACACAACTGGGACTTGCCTACATCTTCTAGGCAGGGCCTTAGGTGGCAGTGGGTCACATGACTGATGCAGACCTACACCCTGCCTGACAGATTAGATCTGTGTATACCTGGAAATGTAAATGCCCAGAGCCTGCCTCTGCAGTAGGTCAAAATTGCACAAGCCAGAAACAAGAGGACTTAGCCTTTGGTCTGGCATGTTCAGAACTCAGGGCCTTTTAGCATGTGGTACCCCCTGGAAGGGCAATTTCACCACATCCTATGCTTTCCCATCAACAG
Seq C2 exon
GCTATTCGACTGGCTGGTATCTGTGATCAACAGCAGCATCTGTGCAGACTTCAGCTCATGGACTGCCTTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852:ENSRNOT00000003886:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGTCAGGACCTCAGCC
R:
CTATGAAGGCAGTCCATGAGCTG
Band lengths:
246-1923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]