MmuINT0104086 @ mm9
Intron Retention
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84711051-84712952:+
Coord C1 exon
chr11:84711051-84711222
Coord A exon
chr11:84711223-84712878
Coord C2 exon
chr11:84712879-84712952
Length
1656 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CTACTCTTCCTCATCAACAGGCT
3' ss Score
8.84
Exon sequences
Seq C1 exon
TCTCTGTGAGGACCTCAGCCTTGCTGCTGCAGCTCCCAGAGAAAATGCTGCTGGAGAGTATGCAGATTCGAACCATCAAGGCAGGCAAGCAGCAGCAGGTGTTCCAGAAGCCCTGCTCCCGAGCCGAGTGTGACACACGCAGAGACTGTCTGGCCAAACTGATCTATGCACG
Seq A exon
GTGAGTGACTTACTCTGGGCCTTCACTTCCCCGTAGGTTCTTAGCCTGTGTAGGGTTGGACCAAACATTGTGAGACAATAGATACAGGTCCAAGATAGTGGAAGCTGGAGAATGCAGACCAGTTGCTGGGCTCCCAGGAGATGCAGGGCATAACTCCCAGGTTTGCCGTAAACCCTGCCTTTGGCCTCTGTGCCTCTATTGAATGGAGAAGTTGCTCCAAAGGTGATCTCCACCTTTACAGCTGGAGGTTGAGACTGTTGAGTAGTATATAGGCTTCTCTGTCACCTGTACCCTGGGACCTTAGGTCATTCATCTGGGGAATTAGAGAGGGGTCCTAGCCGGAAGCTCAGCTCAACAGTCCCCGTCACCAGAATACACAACAGGCAGAAAGGAGCCCAGCATGGCAGGGAAGGTGGGTCCTCACCTTTCTTGGAACATGACATCCTCTGGCTATGTGGTCAAATACTGTCTTATCTTGAGTTTTGAGAACCTTCAGAGTACCTTGTAAAGTCTATCAGAGGCTCAGACTCCCCTGAGATTATTGTGGCCAGTGTTTATATAGGAGTATGTGAAATCTTGGACAACCCTGTTCAGAGCCAAGAATCTGAGGTCTTCCTAAGCCCATGTCAACTAGAGACAGATACATCTGCCTCAAAGCAGGTTTTAGGTCATAAGTTGTGGAATTTTTGTATTTCGGGTTATTTTAAGACAGGGTCTTACTCTATGACTCTGGCTGGCCTGGGACTTAATGTCAGTGCTATAATTAAAGGTGTGTACATTACAGCCAAAAGATTTTTAAGATTTTTTAAGTAACTCTACAAGTTACTGCACAATGGAAAGTTACAGATAGAGAGCTCTTCTAGCTAAAGAGCATTTACACATGGCAGCTGTCATGTTACAATAGTCCACATGGAAGCCGCCATGTTACAATAGTCCACTTACTTTAAGTATCTTGCATGAGAGTTTGAACCCCTGTTGAAAAAAAAATGTCTACTGAATTAAACCAGTTGGAGAGTAATTACTTAAAGAGAAACTAAGGCGTAGTGGCCACCTCTAAGCCCAGCACATTTTAGGCTGAAGTAGGGGCTGTTCGTTCCATACCAGAGTCTCTATGTAGACCCTGTTTCCACAATGGGACAGGGGAAGGCAGTGTGCAGGGAAGACGTCCTTTGAACAGTCTTGTGCTCGGTGCCACCTTGTATAGAAGTGCCATTTTCTCGGGACTAACAACAGTTGCAATAGGGAATGCCATTGCCTTGTGATTTACTCACACACACGTTAGGGCTGAGGAGGAGGTGGCAGCTCCTGAAGTCTTCCCTGGGGAACTCAGTGTACTCAGCTTACACAAATGCAACTGGAGCCTGCCAGTATCTTCTAGTCATGGCGTTAGCTGGCGATGGGTCGTGTGACTAATGCAGACCCATACCCTGCCTGACCCGGGAGCCTAGCTGTCCTGTCTTGCTAGAACAGGTTAGATCTGTGTATACCTAGAAATATATGCCCAGAGCCTGCCTCTGCTGTAGGTCAAGATTGCGTAAGGCAGGAACAAGAGGATTTAGCCTTTGGCCTGGTAGGTTCAGAACTCAGGACCTTTTAGCACGTGGTGCCCTTCCTGGGAGGGCAGTTTTAACACATCCTACTCTTCCTCATCAACAG
Seq C2 exon
GCTGTTCGACTGGCTGGTGTCTGTGATCAACAGCAGCATCTGTGCAGACTCCAAATCATGGACTGCCTTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-Myo19:NM_025414:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGTGAGGACCTCAGCCT
R:
CTATGAAGGCAGTCCATGATTTG
Band lengths:
246-1902
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: