RnoINT0096961 @ rn6
Intron Retention
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72217923-72218579:+
Coord C1 exon
chr10:72217923-72218099
Coord A exon
chr10:72218100-72218426
Coord C2 exon
chr10:72218427-72218579
Length
327 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
ACCCTTGCCCTTCCCAATAGGAC
3' ss Score
11.56
Exon sequences
Seq C1 exon
GAATGCCGCCTTAACCGTCCGAGCAGTGCAGCACAACTACAGACACGCATTGAGAGCACGCTGGCAGGCAGGCCCTGCCTGGGCCATAACAAGCTCAGCCGGGAGCCCAGCTTTGTGGTGATGCATTTCGCAGGACCTGTACGGTACTGCACAGCGGGCCTAGTGGAAAAGAACAAG
Seq A exon
GTAAGCCTGGGCCACAGCATATATATAGCTCCTGGGTAAGAAAGCTGAGTCACTGCTGCATGTACAAAGTAGTTCCTATAGGGCATCCTCTTTCTCCTCAGTGTCCTCTCCTCAAAATCCAGGCTCGTCTCTTGAGCCCTGCCTAAGATCTTTGCTAATCCATCCTGACCTGCCGTGAAGTGGTCCATGCTGTCCATGTCTTCTTGGCCAGCAGGCCCAGTCTTCTTGGGATTCTAGCCTGCCCTCCCAGGAAGCCCAGTACTTGGGGACGGGTAGCCAGCACTAGGAAGCAGCTCACCTCTCTGCCACCCTTGCCCTTCCCAATAG
Seq C2 exon
GACCCTGTTCCCCCTGAGCTGACTGGGCTCCTGCAGCAATCCCAAGACCCCCTGCTCATGATGCTGTTTCCTGCTAACCCTGAAGAGAAGACCCAGGAGGAGCTGTCTGGCCAGAGCAGGGCTCCTGCATTGACTGTGGTGTCCAAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852:ENSRNOT00000003886:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.463
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCCGCCTTAACCGTCC
R:
TGAACTTGGACACCACAGTCA
Band lengths:
328-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]