BtaINT0097862 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13167009-13167649:-
Coord C1 exon
chr19:13167473-13167649
Coord A exon
chr19:13167162-13167472
Coord C2 exon
chr19:13167009-13167161
Length
311 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCTCTGTCCTTTCCCCATAGGAC
3' ss Score
12.73
Exon sequences
Seq C1 exon
GAGTGCCGCCTTAATCGGCCAAGCAGCGCAGCCCAGCTCCAGACGCGCATCGAGAGCGCCCTGACCGGCCACCCCCGCCTGGGGCGCGACAGGCTGAGCCCGGAGCCCAGCTTCATTGTGCTGCATTACGCGGGGCCCGTGCGGTACCGCACCGCGGGCCTGGTGGAGAAGAACAAG
Seq A exon
GTGAGGGCCACGCCGTGCCCGGTGTCACCTGTGAATCCAAACGCGGAGGCGTCGCCGCACGTGTGCAGAAACATCCACTGTGTTCCCTGCCCGCCCGCACATCCTCTCGGGGTCCAGGGTCACCTCTCGGGCCCACCTTTCTGAGGTCTCTGCTACTCTGGCACGACCTGCCTAAAAACAACCCGCCTCATACCGCGTCTCCTGGCCTCCAGGTTCAGACGTGGGCCGGCCCTCCTGGGGCCCCAGTGACAGGGCCGGCAGCTCCCCCCAAGCCCCCTGCCCTCACCCGCTGCTCTGTCCTTTCCCCATAG
Seq C2 exon
GACCCCGTCCCCCCGGAGCTGACCAGCCTCCTGCAGCAGTCCCAGGACCCCCTGCTCAAGGTGCTCTTTCCTGCCGACCCCGAAGACAAGTCCCCTGAGGAGCCCTCCGGCCAGAACCGGGCCCCTGTGTTGACCGTGGTGTCCAAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675:ENSBTAT00000064679:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.583
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTAATCGGCCAAGCAGCG
R:
AACTTGGACACCACGGTCAAC
Band lengths:
318-629
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]