GgaINT0130573 @ galGal3
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8086547-8087159:-
Coord C1 exon
chr19:8086983-8087159
Coord A exon
chr19:8086694-8086982
Coord C2 exon
chr19:8086547-8086693
Length
289 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
AGTCACATTTGTGTTTGCAGGAC
3' ss Score
7.5
Exon sequences
Seq C1 exon
GAATGCCGTTTGAATAGATCCTCCAACCCTGACCTGTTTCAAACTCGGATTGAAAAAGCTTTGTCTGATAATCAATGTTTGAGTCGAGACAAGTTTAGTAAGAAGCCTAACTTCATTATTTCACATTATGCTGGCAAAGTCTGCTATCAGCTGGCAGCAATGGTGGAGAAAAATAAG
Seq A exon
GTAGGTGTTATCAGAAACAGCTATTTAAAAAACAAACTCACAGCCTGGCAGACCAAAAGCAAATTTAGATTTAAGCATCACTAGCATGTATATTCAGCAGTGTTTACTGATTTTGCACATCTTATTGCAAATAAATCATTTCAGATTTGAAACTACAGCTGCAGCTAAGTCACAGTTGGCATAAGAAATACTATTCCATCTACATATGGAGAACTGTTAGTAATTGGATTAAAAGGTGACGGGTTTCTGCATAAGTCCAAATGCTAATGAGTCACATTTGTGTTTGCAG
Seq C2 exon
GACCCCATTCCACCAGAACTTGTGCATGTTCTGCAAAATTCTAAGGACACTTTGCTTCAAAAATTATTTCCTATTGCAGAAACCAACCAAAATAATACCAAAACGCAGAACAGAGCGGCTGTTGTTACAGTGGTGTCAAAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.102
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCAACCCTGACCTGTTT
R:
ACACCACTGTAACAACAGCCG
Band lengths:
295-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]