RnoEX0057224 @ rn6
Exon Skipping
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72220420-72222744:+
Coord C1 exon
chr10:72220420-72220490
Coord A exon
chr10:72220718-72220820
Coord C2 exon
chr10:72222641-72222744
Length
103 bp
Sequences
Splice sites
3' ss Seq
TATAATCTCTGCCCTGGTAGGAC
3' ss Score
7.26
5' ss Seq
AAGGCAAGC
5' ss Score
2.46
Exon sequences
Seq C1 exon
GTCCTGAACCAGTTAGAGGCCTGTGGTCTTGTGGAGACCATCCACATCAGTGCTGCTGGCTTTCCCATCCG
Seq A exon
GACTACACTCCCATGGAAACAAGAACATTAAGTATGAGCCAGACACGGTAGTGCACACCTATGATCTCAGCACTCCAAACGAGACAGGAAGATCAACATTAAG
Seq C2 exon
GGTCTCTCACCAGAACTTCATGGAAAGATATAAATTGCTAACAAGACTCCGACCTCGTACATCCTCTGGCCTCAGGAGCCTGTGTCCTGCCAAAGGGTCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852-'25-25,'25-24,26-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.100 C2=0.019
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.5=100)
A:
PF0006316=Myosin_head=PD(1.3=72.7)
C2:
PF0006316=Myosin_head=PD(4.0=72.2)
Main Inclusion Isoform:
ENSRNOT00000003886fB9231
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCAGTTAGAGGCCTGTGG
R:
CAGAGGACCCTTTGGCAGG
Band lengths:
170-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]