RnoINT0096963 @ rn6
Intron Retention
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72219479-72220490:+
Coord C1 exon
chr10:72219479-72219586
Coord A exon
chr10:72219587-72220419
Coord C2 exon
chr10:72220420-72220490
Length
833 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
TTCTCTCCCCACCCATATAGGTC
3' ss Score
9.59
Exon sequences
Seq C1 exon
GCCTCACTGGAACAGCTCCTGCAGGTCCTGCATAAAACAACCCCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGAGTCAGCCGCAGACTTTCCTCCAGGAAGAG
Seq A exon
GTAACTAACCCTGAGCTACCGCTACCTCTCACCAAGAATAACGAGGAGAGCATCTCCAGATGGGATGCTCACCGGCAGTCTCTTAGGCTGGGCCTCACATTAAGGACGGGCTTATTTCCCTGCTCTGACAGGGTAGTCACCAGTGGCTGTATGGTCTGTACACTCCACCAAAGTCTGACCAAGGTGGCACACGGGGATGCTAGAGTATCTGGCTCCCTGCTCACCTAGCCCATCCCTGACAAGAGACTTGAAACTGCTCAAGGTAATGGTGTTTTCTGATTTGTTCAATATCTGCACAGTCCATGAAGTATGGCTATCTCTGGACTGTCAGTCTCATTTTCCAGTTTACATTAAATCATTCCTCAGGATTTCAGGTTCTGAGAGAATAATAGATGATATGTGAGTTCTGGACAGCACTGAAGAATGTCCCACAGTCACCTGCTAAATGTGCCTGTGTAGCCAAAGATGACTTGGTGAAGTTTGGGTTCAAATCAAACACAACCGTTTTTGCTCGAGCAACTCTGATGCAGGAAGAGAACAGGCAGTTCTGTATTGTGAAGCGGTGTCAGTCCTGCGGATGTGAGAGACAGAACCAGGCCTGCGTCTGTTTTTGTGAGCCTTAGCTATAGGAAGAGCCAGGTACCAGACAGGACCTTTGCAGCTTCACCAGGACCTATTTAGCAGAGATTATCAGGCCCTCTCGGTTTCTCATGATTCCCACAGAGACAGATATCTCCATCAGCCAATTCTGCCTGTCGGTAAAGGTCAGGACGAGAGAGGCAGAAGAAATGACGTTCCTGGCCCGTACTTGCTTTCTCTCCCCACCCATATAG
Seq C2 exon
GTCCTGAACCAGTTAGAGGCCTGTGGTCTTGTGGAGACCATCCACATCAGTGCTGCTGGCTTTCCCATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852:ENSRNOT00000003886:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]