DreINT0014902 @ danRer10
Intron Retention
Gene
ENSDARG00000073761 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr5:3635306-3636708:-
Coord C1 exon
chr5:3636599-3636708
Coord A exon
chr5:3635377-3636598
Coord C2 exon
chr5:3635306-3635376
Length
1222 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
TTGGTTTTGTTTGTGTTCAGGTC
3' ss Score
9.83
Exon sequences
Seq C1 exon
AGAATTCACTGGAAAGCCTGATGAAGATTTTGCACAGCACCACTCCACACTACACACGCTGCATTAAACCAAACCCGGACTGCAGACCACTCACTTTCCAAAAGGAAGAG
Seq A exon
GTATGGAAAATGATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCGTCCGTCCGTCCGTCCGTCCGTCCTTCTGTCCATTTATCCATCCATCCATCCATCCATCGTTCTATCATTCCATCTGTCTGTCTGTCCACCCATCCATCCATTCATCTGCTTGTCCGTCCATCCATCCATCCATCCATCCATCCATCAGCCTTACTATCTATATGTCTATCTGTTTTTGTCTGTCTATTCATCTATCTATCTGTCTGTTTGTCCGTCCGTCCGTCTATCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCCGTCCGTCCGTCTGTCTGTCTATCTCTGTCTGTCTGTCTCATATTTTCTATCATTCCATCTATCTGTCTGTTGATCCATCCATCCATTCATCCGCCTGTCTATCTATCATTCTATCTATTGTCCTATCTAACCATTTATCGTTCTATCTTTTGTTCTATCAATTGTTCTATCATTCAATTTATCTGTCCATTCATCCAACTGCCTGTCTAGCTATCTGTCTATATATCTATCTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCAGCCCTTTGTCTGTTTGTCTGTCTGTCTGTCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCGTTCTATTGTACTATCATTCCATCTCTCTGTTTGTCCACCCATCCATCCATTCATCTGCTTATTCATCCATCCATCCATCCATCTTACTGTCTATATGTCTGTCTGTTTGTTTGTCTGTCTATTCATCTATCCATTTATCCATCCATCCATCCGTATGTCCGTCTATCCGTCTGTCTATCCGTCCGTCTGTCAATCTGTCTGTCCGTCTGTCCGTCTATCGCTTAATTCGTCCATCCATCAATCCATCTTTTGTTCTATCTATTTATCTATTGTTCCATCTATAATTTCATCTGTCTGTTGTTCCATCTATCTATTATTCAACCGTTAATTGCTGTGTATTAATGTGGCTTTTCTTTAAAAGTTACAAGTAGAAGGAGTTTATGGGTCAAATTCAATTCCTGGAGTGTCACAGCTCTGCACAGTTTAGTTCCAACCCTGCTTCAACACACCTGATCAGCGAGTTGGTTTTGGTTTTGTTTGTGTTCAG
Seq C2 exon
GTCATCGCTCAGCTTGAAGCCTGTGGGATTGTGGAGACCATAAACATCAGTGCAGCGGGTTTTCCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073761:ENSDART00000111453:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(28.1=97.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]